Evidence map›Paper›PMID 29353341›Full record

ArticleNeuroinformatics2018

Field of View Normalization in Multi-Site Brain MRI.

Yangming Ou, Lilla Zöllei, Xiao Da, Kallirroi Retzepi, Shawn N Murphy, Elizabeth R Gerstner, Bruce R Rosen, P Ellen Grant, Jayashree Kalpathy-Cramer, Randy L Gollub

Abstract read
In one paragraph

Article in Neuroinformatics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. aXonica: A support package for MRI based Neuroimaging.Biotechnology notes (Amsterdam, Netherlands) · 2024
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Global-Local Transformer for Brain Age Estimation.IEEE transactions on medical imaging · 2022
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Yangming OuDepartment of Pediatrics and Radiology, Boston Children's Hospital, Harvard Medical School, Boston, MA, USA. yangming.ou@childrens.harvard.edu.ORCID 0000-0002-7726-6208
Lilla ZölleiDepartment of Radiology, Massachusetts General Hospital, Harvard Medical School, Boston, MA, USA.
Xiao DaFunctional Neuroimaging Laboratory, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA.
Kallirroi RetzepiDepartment of Radiology, Massachusetts General Hospital, Harvard Medical School, Boston, MA, USA.
Shawn N MurphyResearch Computing, Partners Healthcare, Boston, MA, USA.
Elizabeth R GerstnerNeuro-Oncology, Massachusetts General Hospital, Harvard Medical School, Boston, MA, USA.
Bruce R RosenDepartment of Radiology, Massachusetts General Hospital, Harvard Medical School, Boston, MA, USA.
P Ellen GrantDepartment of Pediatrics and Radiology, Boston Children's Hospital, Harvard Medical School, Boston, MA, USA.
Jayashree Kalpathy-CramerDepartment of Radiology, Massachusetts General Hospital, Harvard Medical School, Boston, MA, USA.
Randy L GollubDepartment of Radiology, Massachusetts General Hospital, Harvard Medical School, Boston, MA, USA.

Funding

Informatics Tools for Optimized Imaging Biomarkers for Cancer Research&DiscoveryU24CA180927 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI KALPATHY-CRAMER, JAYASHREE, ROSEN, BRUCE R · 2014 to 2018
$3.4M
Quantitative MRI of Glioblastoma ResponseU01CA154601 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI KALPATHY-CRAMER, JAYASHREE · 2011 to 2016
$3.4M
mi2b2 Enabled Pediatric Radiological Decision SupportR01EB014947 · NIBIB · MASSACHUSETTS GENERAL HOSPITAL · PI GRANT, PATRICIA ELLEN, HIRSCHTICK, RANDY L · 2012 to 2015
$2.8M
A Storage Area Network for Structural and Functional Image AnalysisS10RR023401 · NCRR · MASSACHUSETTS GENERAL HOSPITAL · PI FISCHL, BRUCE · 2009 to 2009
$2.0M
SILICON GRAPHICS PRISM EXTREME 128P/1TBS10RR023043 · NCRR · MASSACHUSETTS GENERAL HOSPITAL · PI SORENSEN, ALMA GREGORY · 2006 to 2006
$1.5M
Evaluation of impact of anti-VEGF drugs on concomitant chemotherapy in GBMK23CA169021 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI GERSTNER, ELIZABETH · 2014 to 2018
$896k
Age-Dependent Analysis Techniques for Pediatric Structural and Diffusion MRI DataR00HD061485 · NICHD · MASSACHUSETTS GENERAL HOSPITAL · PI ZOLLEI, LILLA · 2012 to 2014
$706k
Computeserver Structural &Functional Image AnalysisS10RR019307 · NCRR · MASSACHUSETTS GENERAL HOSPITAL · PI FISCHL, BRUCE · 2004 to 2004
$496k
NCI NIH HHS K23 CA169021NCI NIH HHS U01 CA154601NCI NIH HHS U24 CA180927NCRR NIH HHS S10 RR019307NCRR NIH HHS S10 RR023043NCRR NIH HHS S10 RR023401NIBIB NIH HHS R01 EB014947NICHD NIH HHS R00 HD061485NIH HHS K23CA169021NIH HHS R00HD061485NIH HHS R01EB014947NIH HHS U01CA154601NIH HHS U24CA180927
6 · The paper itself

Abstract

Multi-site brain MRI analysis is needed in big data neuroimaging studies, but challenging. The challenges lie in almost every analysis step including skull stripping. The diversities in multi-site brain MR images make it difficult to tune parameters specific to subjects or imaging protocols. Alternatively, using constant parameter settings often leads to inaccurate, inconsistent and even failed skull stripping results. One reason is that images scanned at different sites, under different scanners or protocols, and/or by different technicians often have very different fields of view (FOVs). Normalizing FOV is currently done manually or using ad hoc pre-processing steps, which do not always generalize well to multi-site diverse images. In this paper, we show that (a) a generic FOV normalization approach is possible in multi-site diverse images; we show experiments on images acquired from Philips, GE, Siemens scanners, from 1.0T, 1.5T, 3.0T field of strengths, and from subjects 0-90 years of ages; and (b) generic FOV normalization improves skull stripping accuracy and consistency for multiple skull stripping algorithms; we show this effect for 5 skull stripping algorithms including FSL's BET, AFNI's 3dSkullStrip, FreeSurfer's HWA, BrainSuite's BSE, and MASS. We have released our FOV normalization software at http://www.nitrc.org/projects/normalizefov .

Indexed as

Databases, FactualAdolescentAdultAgedAged, 80 and overAlgorithmsBrainChildChild, PreschoolHumansImage Processing, Computer-AssistedInfantInfant, NewbornMagnetic Resonance ImagingMiddle AgedSkullField of viewMulti-site MRINormalizationStandardization

Identifiers

PMID29353341
PMCPMC7334884

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.