ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2018
Identification of a molecular marker tightly linked to bacterial wilt resistance in tomato by genome-wide SNP analysis.
Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.
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21 citing papers in PubMed, 47 citations in OpenAlex.
- New biologically relevant resistance to bacterial wilt in heat-stressed tomato revealed by two-reference Genome Wide Association.PLoS genetics · 2026Article
- Recent progress in DNA marker-assisted selection for vegetable breeding in Japan.Breeding science · 2026Article
- Metabolomic Analysis of Tomato Plants Treated With Garlic Extract,Plant-environment interactions (Hoboken, N.J.) · 2025Article
- Genome-Wide Association Analysis and Breeding-Oriented SNP Marker Development for Bacterial Wilt Resistance in Tomato (Plants (Basel, Switzerland) · 2025Article
- Integrative multi-omics and computer-aided biofungicide design approach to combat fusarium wilt of chickpea.Planta · 2025Review
- Molecular breeding of tomato: Advances and challenges.Journal of integrative plant biology · 2025Review
- Whole-genome resequencing of Japanese large-sized tomato cultivars provides insights into the history of modern breeding.Breeding science · 2024Article
- ETI signaling nodes are involved in resistance of Hawaii 7996 toPlant signaling & behavior · 2023Article
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- Identification and characterization of resistance quantitative trait loci against bacterial wilt caused by theMolecular breeding : new strategies in plant improvement · 2022Article
- Assessment of Temperature-Independent Resistance against Bacterial Wilt Using Major QTL in Cultivated Tomato (Plants (Basel, Switzerland) · 2022Article
- Whole genome resequencing and complementation tests reveal candidate loci contributing to bacterial wilt (Ralstonia sp.) resistance in tomato.Scientific reports · 2022Article
- Leaf-to-Whole Plant Spread Bioassay for Pepper andInternational journal of molecular sciences · 2021Article
- QTL-Seq Analysis for Identification of Resistance Loci to Bacterial Canker in Tomato.Frontiers in plant science · 2021Article
- A High-Density Genetic Map Enables Genome Synteny and QTL Mapping of Vegetative Growth and Leaf Traits in Gardenia.Frontiers in genetics · 2021Article
- New Transcriptome-Based SNP Markers for Noug (Genes · 2020Article
- Development of diagnostic molecular markers for marker-assisted breeding against bacterial wilt in tomato.Breeding science · 2020Article
- Functional Markers for Precision Plant Breeding.International journal of molecular sciences · 2020Review
- Dissection of complex traits of tomato in the post-genome era.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020Review
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Authors and funding
7 authors at 3 institutions in 1 country.
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Abstract
key messageGenotyping of disease resistance to bacterial wilt in tomato by a genome-wide SNP analysis Bacterial wilt caused by Ralstonia pseudosolanacearum is one of the destructive diseases in tomato. The previous studies have identified Bwr-6 (chromosome 6) and Bwr-12 (chromosome 12) loci as the major quantitative trait loci (QTLs) contributing to resistance against bacterial wilt in tomato cultivar 'Hawaii7996'. However, the genetic identities of two QTLs have not been uncovered yet. In this study, using whole-genome resequencing, we analyzed genome-wide single-nucleotide polymorphisms (SNPs) that can distinguish a resistant group, including seven tomato varieties resistant to bacterial wilt, from a susceptible group, including two susceptible to the same disease. In total, 5259 non-synonymous SNPs were found between the two groups. Among them, only 265 SNPs were located in the coding DNA sequences, and the majority of these SNPs were located on chromosomes 6 and 12. The genes that both carry SNP(s) and are near Bwr-6 and Bwr-12 were selected. In particular, four genes in chromosome 12 encode putative leucine-rich repeat (LRR) receptor-like proteins. SNPs within these four genes were used to develop SNP markers, and each SNP marker was validated by a high-resolution melting method. Consequently, one SNP marker, including a functional SNP in a gene, Solyc12g009690.1, could efficiently distinguish tomato varieties resistant to bacterial wilt from susceptible varieties. These results indicate that Solyc12g009690.1, the gene encoding a putative LRR receptor-like protein, might be tightly linked to Bwr-12, and the SNP marker developed in this study will be useful for selection of tomato cultivars resistant to bacterial wilt.
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