Evidence map›Paper›PMID 29352173›Full record

ArticleScientific reports2018

Maize chlorotic mottle virus exhibits low divergence between differentiated regional sub-populations.

Luke Braidwood, Diego F Quito-Avila, Darlene Cabanas, Alberto Bressan, Anne Wangai, David C Baulcombe

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
7.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 38 citations in OpenAlex.

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  8. Polerovirus genomic variation.Virus evolution · 2021
    Article
  9. Global Plant Virus Disease Pandemics and Epidemics.Plants (Basel, Switzerland) · 2021
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 5 countries.

Luke BraidwoodUniversity of Cambridge, Plant Sciences, Cambridge, CB2 3EA, United Kingdom. lab70@cam.ac.uk.ORCID http://orcid.org/0000-0002-0233-3605
Diego F Quito-AvilaCentro de Investigaciones Biotecnologicas del Ecuador, Facultad de Ciencias de la Vida, Escuela Superior Politecnica del Litoral, ESPOL, Guayaquil, Ecuador.
Darlene CabanasDepartment of Molecular Biosciences and Bioengineering, University of Hawaii, 3050 Maile Way, Gilmore Hall 310, Honolulu, Hawaii, USA.
Alberto BressanDepartment of Plant and Environmental Protection Sciences, University of Hawaii, 3050 Maile Way, Gilmore Hall 310, Honolulu, Hawaii, USA.
Anne WangaiKenya Agricultural and Livestock Research Organization (KALRO), Nairobi, Kenya.
David C BaulcombeUniversity of Cambridge, Plant Sciences, Cambridge, CB2 3EA, United Kingdom.ORCID http://orcid.org/0000-0003-0780-6878
University of Cambridge · GBUniversity of Hawaii System · USEscuela Superior Politecnica del Litoral · ECKenya Agricultural and Livestock Research Organization · KE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Maize chlorotic mottle virus has been rapidly spreading around the globe over the past decade. The interactions of maize chlorotic mottle virus with Potyviridae viruses causes an aggressive synergistic viral condition - maize lethal necrosis, which can cause total yield loss. Maize production in sub-Saharan Africa, where it is the most important cereal, is threatened by the arrival of maize lethal necrosis. We obtained maize chlorotic mottle virus genome sequences from across East Africa and for the first time from Ecuador and Hawaii, and constructed a phylogeny which highlights the similarity of Chinese to African isolates, and Ecuadorian to Hawaiian isolates. We used a measure of clustering, the adjusted Rand index, to extract region-specific SNPs and coding variation that can be used for diagnostics. The population genetics analysis we performed shows that the majority of sequence diversity is partitioned between populations, with diversity extremely low within China and East Africa.

Indexed as

Base SequenceComputational BiologyGammaherpesvirinaeGenetic VariationGenome, ViralGenotypeGeography, MedicalHigh-Throughput Nucleotide SequencingPhylogenyPlant DiseasesPolymorphism, Single Nucleotide

Identifiers

PMID29352173
PMCPMC5775324
OpenAlexW2782666094

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.