Evidence map›Paper›PMID 29351633›Full record

ArticleGenome biology and evolution2018

Evolutionary Genetics of Cytoplasmic Incompatibility Genes cifA and cifB in Prophage WO of Wolbachia.

Amelia R I Lindsey, Danny W Rice, Sarah R Bordenstein, Andrew W Brooks, Seth R Bordenstein, Irene L G Newton

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Genome biology and evolution, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 116 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
116citing papers in PubMed, 1 pooled it
23.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

116 citing papers in PubMed, 1 synthesis or guideline pooled it, 181 citations in OpenAlex.

  1. A Meta-Analysis ofG3 (Bethesda, Md.) · 2020
    Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Temperature-sensitive cytoplasmic incompatibility across divergentbioRxiv : the preprint server for biology · 2026
    Article
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  10. Article
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  18. Article
  19. Male-dependent resistance toRoyal Society open science · 2025
    Article
  20. Article

56 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

Amelia R I LindseyDepartment of Entomology, University of California Riverside.
Danny W RiceDepartment of Biology, Indiana University, Bloomington.
Sarah R BordensteinDepartment of Biological Sciences, Vanderbilt University.
Andrew W BrooksDepartment of Biological Sciences, Vanderbilt University.
Seth R BordensteinDepartment of Biological Sciences, Vanderbilt University.
Irene L G NewtonDepartment of Biology, Indiana University, Bloomington.
Biology of Infection · FRIndiana University Bloomington · USUniversity of California, Riverside · USVanderbilt University · US

Funding

Translational Analysis CoreP30DK058404 · NIDDK · VANDERBILT UNIVERSITY MEDICAL CENTER · PI RICHARD M. PEEK · 2002 to 2026
$29.9M
Training Program on Genetic Variation and Human PhenotypesT32GM080178 · NIGMS · VANDERBILT UNIVERSITY · PI COX, NANCY J, SAMUELS, DAVID C · 2007 to 2021
$3.1M
The Genetic Basis of Cytoplasmic IncompatibilityR01AI132581 · NIAID · VANDERBILT UNIVERSITY · PI BORDENSTEIN, SETH R · 2017 to 2021
$2.0M
Wolbachia Genes That Mediate Cytoplasmic IncompatibilityR21HD086833 · NICHD · VANDERBILT UNIVERSITY · PI BORDENSTEIN, SETH R · 2016 to 2017
$432k
NIAID NIH HHS R01 AI132581NICHD NIH HHS R21 HD086833NIDDK NIH HHS P30 DK058404NIGMS NIH HHS T32 GM080178
6 · The paper itself

Abstract

The bacterial endosymbiont Wolbachia manipulates arthropod reproduction to facilitate its maternal spread through host populations. The most common manipulation is cytoplasmic incompatibility (CI): Wolbachia-infected males produce modified sperm that cause embryonic mortality, unless rescued by embryos harboring the same Wolbachia. The genes underlying CI, cifA and cifB, were recently identified in the eukaryotic association module of Wolbachia's prophage WO. Here, we use transcriptomic and genomic approaches to address three important evolutionary facets of the cif genes. First, we assess whether or not cifA and cifB comprise a classic toxin-antitoxin operon in wMel and show that the two genes exhibit striking, transcriptional differences across host development. They can produce a bicistronic message despite a predicted hairpin termination element in their intergenic region. Second, cifA and cifB strongly coevolve across the diversity of phage WO. Third, we provide new domain and functional predictions across homologs within Wolbachia, and show that amino acid sequences vary substantially across the genus. Finally, we investigate conservation of cifA and cifB and find frequent degradation and loss of the genes in strains that no longer induce CI. Taken together, we demonstrate that cifA and cifB exhibit complex transcriptional regulation in wMel, provide functional annotations that broaden the potential mechanisms of CI induction, and report recurrent erosion of cifA and cifB in non-CI strains, thus expanding our understanding of the most widespread form of reproductive parasitism.

Indexed as

Genes, ViralAnimalsArthropodsEvolution, MolecularMaleProphagesReproductionSymbiosisTranscriptomeWolbachiabacteriophagegene lossprophagereproductive manipulationsymbiosis

Identifiers

PMID29351633
PMCPMC5793819
OpenAlexW2953229851

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.