Evidence map›Paper›PMID 29351563›Full record

ArticlePloS one2018

A consensus linkage map of lentil based on DArT markers from three RIL mapping populations.

Duygu Ates, Secil Aldemir, Ahmad Alsaleh, Semih Erdogmus, Seda Nemli, Abdullah Kahriman, Hakan Ozkan, Albert Vandenberg, Bahattin Tanyolac

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
5.1field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 31 citations in OpenAlex.

  1. Review
  2. Consensus genetic map and QTLs for morphological and agronomical traits in mungbean using DArT markers.Physiology and molecular biology of plants : an international journal of functional plant biology · 2022
    Article
  3. Review
  4. Article
  5. Frontiers in plant science · 2021
    Article
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 2 countries.

Duygu AtesDepartment of Bioengineering, Faculty of Engineering, Ege University, Bornova, Izmir, Turkey.
Secil AldemirDepartment of Bioengineering, Faculty of Engineering, Ege University, Bornova, Izmir, Turkey.
Ahmad AlsalehDepartment of Field Crops, Faculty of Agriculture, Cukurova University, Adana, Turkey.
Semih ErdogmusDepartment of Bioengineering, Faculty of Engineering, Ege University, Bornova, Izmir, Turkey.
Seda NemliDepartment of Bieoengineering and Genetics, Gumushane University, Gumushane, Turkey.
Abdullah KahrimanDepartment of Field Crops, Faculty of Agriculture, Harran University, Sanlı Urfa, Turkey.
Hakan OzkanDepartment of Field Crops, Faculty of Agriculture, Cukurova University, Adana, Turkey.
Albert VandenbergCrop Development Centre, University of Saskatchewan, Saskatoon, Saskatchewan, Canada.
Bahattin TanyolacDepartment of Bioengineering, Faculty of Engineering, Ege University, Bornova, Izmir, Turkey.ORCID 0000-0002-4368-0988
Ege University · TRCukurova University · TRGümüşhane University · TRHarran University · TRUniversity of Saskatchewan · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundLentil (Lens culinaris ssp. culinaris Medikus) is a diploid (2n = 2x = 14), self-pollinating grain legume with a haploid genome size of about 4 Gbp and is grown throughout the world with current annual production of 4.9 million tonnes. MATERIALS AND

methodsA consensus map of lentil (Lens culinaris ssp. culinaris Medikus) was constructed using three different lentils recombinant inbred line (RIL) populations, including "CDC Redberry" x "ILL7502" (LR8), "ILL8006" x "CDC Milestone" (LR11) and "PI320937" x "Eston" (LR39).

resultsThe lentil consensus map was composed of 9,793 DArT markers, covered a total of 977.47 cM with an average distance of 0.10 cM between adjacent markers and constructed 7 linkage groups representing 7 chromosomes of the lentil genome. The consensus map had no gap larger than 12.67 cM and only 5 gaps were found to be between 12.67 cM and 6.0 cM (on LG3 and LG4). The localization of the SNP markers on the lentil consensus map were in general consistent with their localization on the three individual genetic linkage maps and the lentil consensus map has longer map length, higher marker density and shorter average distance between the adjacent markers compared to the component linkage maps.

conclusionThis high-density consensus map could provide insight into the lentil genome. The consensus map could also help to construct a physical map using a Bacterial Artificial Chromosome library and map based cloning studies. Sequence information of DArT may help localization of orientation scaffolds from Next Generation Sequencing data.

Indexed as

Chromosome MappingConsensus SequenceDNA, PlantGenetic LinkageGenome, PlantLens PlantPolymorphism, Single NucleotideDNA, Plant

Identifiers

PMID29351563
PMCPMC5774769
OpenAlexW2789864403

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.