Evidence map›Paper›PMID 29351292›Full record

ArticlePLoS genetics2018

Allocation of distinct organ fates from a precursor field requires a shift in expression and function of gene regulatory networks.

Sneha Palliyil, Jinjin Zhu, Luke R Baker, Sarah D Neuman, Arash Bashirullah, Justin P Kumar

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.4field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Sneha PalliyilDepartment of Biology, Indiana University, Bloomington, Indiana, United States of America.ORCID 0000-0001-9073-9375
Jinjin ZhuDepartment of Biology, Indiana University, Bloomington, Indiana, United States of America.
Luke R BakerDepartment of Biology, Indiana University, Bloomington, Indiana, United States of America.
Sarah D NeumanDivision of Pharmaceutical Sciences, University of Wisconsin, Madison, Wisconsin, United States of America.ORCID 0000-0001-5731-6426
Arash BashirullahDivision of Pharmaceutical Sciences, University of Wisconsin, Madison, Wisconsin, United States of America.
Justin P KumarDepartment of Biology, Indiana University, Bloomington, Indiana, United States of America.ORCID 0000-0001-9991-7932
Indiana University Bloomington · USUniversity of Wisconsin–Madison · US

Funding

Repression of Non-Ocular Fates by the SIX and EYA Genes During Specification and Patterning of the RetinaR01EY014863 · NEI · TRUSTEES OF INDIANA UNIVERSITY · PI KUMAR, JUSTIN P · 2003 to 2017
$4.3M
Genetic analysis of regulated exocytosis during Drosophila developmentR01GM123204 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI BASHIRULLAH, ARASH · 2017 to 2020
$1.4M
Genetic Analysis of Apoptosis during Drosophila DevelopmentR01GM095944 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI BASHIRULLAH, ARASH · 2011 to 2015
$1.4M
NEI NIH HHS R01 EY014863NIGMS NIH HHS R01 GM095944NIGMS NIH HHS R01 GM123204NIH HHS R01 GM095944
6 · The paper itself

Abstract

A common occurrence in metazoan development is the rise of multiple tissues/organs from a single uniform precursor field. One example is the anterior forebrain of vertebrates, which produces the eyes, hypothalamus, diencephalon, and telencephalon. Another instance is the Drosophila wing disc, which generates the adult wing blade, the hinge, and the thorax. Gene regulatory networks (GRNs) that are comprised of signaling pathways and batteries of transcription factors parcel the undifferentiated field into discrete territories. This simple model is challenged by two observations. First, many GRN members that are thought to control the fate of one organ are actually expressed throughout the entire precursor field at earlier points in development. Second, each GRN can simultaneously promote one of the possible fates choices while repressing the other alternatives. It is therefore unclear how GRNs function to allocate tissue fates if their members are uniformly expressed and competing with each other within the same populations of cells. We address this paradigm by studying fate specification in the Drosophila eye-antennal disc. The disc, which begins its development as a homogeneous precursor field, produces a number of adult structures including the compound eyes, the ocelli, the antennae, the maxillary palps, and the surrounding head epidermis. Several selector genes that control the fates of the eye and antenna, respectively, are first expressed throughout the entire eye-antennal disc. We show that during early stages, these genes are tasked with promoting the growth of the entire field. Upon segregation to distinct territories within the disc, each GRN continues to promote growth while taking on the additional roles of promoting distinct primary fates and repressing alternate fates. The timing of both expression pattern restriction and expansion of functional duties is an elemental requirement for allocating fates within a single field.

Indexed as

Drosophila melanogasterGene Expression Regulation, DevelopmentalAnimalsAnimals, Genetically ModifiedBody PatterningEmbryo, NonmammalianGene Regulatory NetworksGenes, SwitchOrganogenesisWings, Animal

Identifiers

PMID29351292
PMCPMC5792024
OpenAlexW2782862481

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.