Evidence map›Paper›PMID 29350431›Full record

ArticleMolecular carcinogenesis2018

miFAST: A novel and rapid microRNA target capture method.

Ashley M Poenitzsch Strong, Scott M Berry, David J Beebe, Jian-Liang Li, Vladimir S Spiegelman

Open access · greenAbstract read
In one paragraph

Article in Molecular carcinogenesis, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.2field-weighted citation impact, top 50% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Ashley M Poenitzsch StrongDepartment of Dermatology, University of Wisconsin-Madison, Madison, Wisconsin.ORCID 0000-0001-7677-7121
Scott M BerryDepartment of Biomedical Engineering, University of Wisconsin-Madison, Madison, Wisconsin.
David J BeebeDepartment of Biomedical Engineering, University of Wisconsin-Madison, Madison, Wisconsin.
Jian-Liang LiSanford Burnham Prebys Medical Discovery Institute, Orlando, Florida.
Vladimir S SpiegelmanDivision of Pediatric Hematology/Oncology, Department of Pediatrics, Pennsylvania State University, College of Medicine, Hershey, Pennsylvania.
University of Wisconsin–Madison · USPennsylvania State University · USSanford Burnham Prebys Medical Discovery Institute · US

Funding

Molecular & Environmental Toxicology Pre-& Postdoctoral Training ProgramT32ES007015 · NIEHS · UNIVERSITY OF WISCONSIN-MADISON · PI CHRISTOPHER A BRADFIELD · 1985 to 2026
$11.5M
RNA-binding protein CRD-BP in melanocyte biologyR01AR063361 · NIAMS · UNIVERSITY OF WISCONSIN-MADISON · PI SPIEGELMAN, VLADIMIR S. · 2013 to 2017
$1.6M
CRD-BP-mediated regulation of Wnt signaling in intestinal tumorigenesisR21CA191550 · NCI · UNIVERSITY OF WISCONSIN-MADISON · PI SPIEGELMAN, VLADIMIR S. · 2015 to 2016
$364k
NCI NIH HHS R21 CA191550NIAMS NIH HHS R01 AR063361NIEHS NIH HHS T32 ES007015
6 · The paper itself

Abstract

MicroRNAs (miRNAs), small 22-25 nucleotide non-coding RNAs, play important roles in cellular and tumor biology. However, characterizing miRNA function remains challenging due to an abundance of predicted targets and an experimental bottleneck in identifying biologically relevant direct targets. Here, we developed a novel technique (miFAST) to identify direct miRNA target genes. Using miFAST, we confirmed several previously reported miR-340 target genes and identified five additional novel direct miR-340 targets in melanoma cells. This methodology can also be efficiently applied for the global characterization of miRNA targets. Utilizing miFAST to characterize direct miRNA targetomes will further our understanding of miRNA biology and function.

Indexed as

Gene Expression Regulation, NeoplasticCell Line, TumorGene Expression ProfilingHumansMicroRNAsMolecular BiologyReproducibility of ResultsMicroRNAsMIRN340 microRNA, humandirect mRNA targetsmicroRNAsmiFASTmiRNA characterization

Identifiers

PMID29350431
PMCPMC8858646
OpenAlexW2790485718

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.