Evidence map›Paper›PMID 29348634›Full record

ArticleNature communications2018

A biosensor-based framework to measure latent proteostasis capacity.

Rebecca J Wood, Angelique R Ormsby, Mona Radwan, Dezerae Cox, Abhishek Sharma, Tobias Vöpel, Simon Ebbinghaus, Mikael Oliveberg, Gavin E Reid, Alex Dickson and 1 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 53 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Deciphering the aging process through single-cell cytometric technologies.Cytometry. Part A : the journal of the International Society for Analytical Cytology · 2024
    Review
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Biosensors for Studying Neuronal Proteostasis.Frontiers in molecular neuroscience · 2022
    Review
  12. Review
  13. Article
  14. Chemical Biology Framework to Illuminate Proteostasis.Annual review of biochemistry · 2020
    Review
  15. Widespread remodeling of proteome solubility in response to different protein homeostasis stresses.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  16. Article
  17. Article
  18. Review
  19. To Decipher theMolecules (Basel, Switzerland) · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 4 countries.

Rebecca J WoodDepartment of Biochemistry and Molecular Biology, Bio21 Molecular Science and Biotechnology Institute, University of Melbourne, Parkville, VIC, 3010, Australia.
Angelique R OrmsbyDepartment of Biochemistry and Molecular Biology, Bio21 Molecular Science and Biotechnology Institute, University of Melbourne, Parkville, VIC, 3010, Australia.
Mona RadwanDepartment of Biochemistry and Molecular Biology, Bio21 Molecular Science and Biotechnology Institute, University of Melbourne, Parkville, VIC, 3010, Australia.
Dezerae CoxDepartment of Biochemistry and Molecular Biology, Bio21 Molecular Science and Biotechnology Institute, University of Melbourne, Parkville, VIC, 3010, Australia.
Abhishek SharmaDepartment of Physical Chemistry II, Ruhr-University Bochum, Universitaetsstraße 150, 44780, Bochum, Germany.
Tobias VöpelDepartment of Physical Chemistry II, Ruhr-University Bochum, Universitaetsstraße 150, 44780, Bochum, Germany.ORCID http://orcid.org/0000-0003-0844-2375
Simon EbbinghausDepartment of Physical Chemistry II, Ruhr-University Bochum, Universitaetsstraße 150, 44780, Bochum, Germany.
Mikael OlivebergDepartment of Biochemistry and Biophysics, Arrhenius Laboratories of Natural Sciences, Stockholm University, 10691, Stockholm, Sweden.
Gavin E ReidDepartment of Biochemistry and Molecular Biology, Bio21 Molecular Science and Biotechnology Institute, University of Melbourne, Parkville, VIC, 3010, Australia.
Alex DicksonDepartment of Biochemistry & Molecular Biology, Michigan State University, East Lansing, MI, 48824, USA.
Danny M HattersDepartment of Biochemistry and Molecular Biology, Bio21 Molecular Science and Biotechnology Institute, University of Melbourne, Parkville, VIC, 3010, Australia. dhatters@unimelb.edu.au.ORCID http://orcid.org/0000-0002-9965-2847
The University of Melbourne · AURuhr University Bochum · DEMichigan State University · USStockholm University · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The pool of quality control proteins (QC) that maintains protein-folding homeostasis (proteostasis) is dynamic but can become depleted in human disease. A challenge has been in quantitatively defining the depth of the QC pool. With a new biosensor, flow cytometry-based methods and mathematical modeling we measure the QC capacity to act as holdases and suppress biosensor aggregation. The biosensor system comprises a series of barnase kernels with differing folding stability that engage primarily with HSP70 and HSP90 family proteins. Conditions of proteostasis stimulation and stress alter QC holdase activity and aggregation rates. The method reveals the HSP70 chaperone cycle to be rate limited by HSP70 holdase activity under normal conditions, but this is overcome by increasing levels of the BAG1 nucleotide exchange factor to HSPA1A or activation of the heat shock gene cluster by HSF1 overexpression. This scheme opens new paths for biosensors of disease and proteostasis systems.

Indexed as

Models, TheoreticalProteostasisAlgorithmsBiosensing TechniquesBlotting, WesternFlow CytometryHeat Shock Transcription FactorsHEK293 CellsHSP72 Heat-Shock ProteinsHSP90 Heat-Shock ProteinsHumansProteomeProteomicsTandem Mass SpectrometryHeat Shock Transcription FactorsHSF1 protein, humanHSP72 Heat-Shock ProteinsHSP90 Heat-Shock ProteinsProteome

Identifiers

PMID29348634
PMCPMC5773518
OpenAlexW2783584993

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.