Evidence map›Paper›PMID 29348603›Full record

ArticleScientific reports2018

Comprehensive list of SUMO targets in Caenorhabditis elegans and its implication for evolutionary conservation of SUMO signaling.

Krzysztof Drabikowski, Jacqueline Ferralli, Michal Kistowski, Jacek Oledzki, Michal Dadlez, Ruth Chiquet-Ehrismann

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
  2. Chromosome-ContiguousInternational journal of molecular sciences · 2025
    Article
  3. ULP-2 SUMO protease regulates UPRFree radical biology & medicine · 2024
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Krzysztof DrabikowskiInstitute of Biochemistry and Biophysics, Polish Academy of Science, Warszawa, Poland. drabikowski@ibb.waw.pl.
Jacqueline FerralliFriedrich Miescher Institute for Biomedical Research, Department of Mechanisms of Cancer, Maulbeerstrasse 66, CH-4058, Basel, Switzerland.
Michal KistowskiInstitute of Biochemistry and Biophysics, Polish Academy of Science, Warszawa, Poland.
Jacek OledzkiInstitute of Biochemistry and Biophysics, Polish Academy of Science, Warszawa, Poland.
Michal DadlezInstitute of Biochemistry and Biophysics, Polish Academy of Science, Warszawa, Poland.
Ruth Chiquet-EhrismannFriedrich Miescher Institute for Biomedical Research, Department of Mechanisms of Cancer, Maulbeerstrasse 66, CH-4058, Basel, Switzerland.
Institute of Biochemistry and Biophysics, Polish Academy of Sciences · PLFriedrich Miescher Institute · CHUniversity of Basel · CH

Funding

Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Aric L Daul, Ann E. Rougvie · 2012 to 2026
$7.5M
NIH HHS P40 OD010440
6 · The paper itself

Abstract

Post-translational modification by small ubiquitin-related modifier (SUMO) is a key regulator of cell physiology, modulating protein-protein and protein-DNA interactions. Recently, SUMO modifications were postulated to be involved in response to various stress stimuli. We aimed to identify the near complete set of proteins modified by SUMO and the dynamics of the modification in stress conditions in the higher eukaryote, Caenorhabditis elegans. We identified 874 proteins modified by SUMO in the worm. We have analyzed the SUMO modification in stress conditions including heat shock, DNA damage, arsenite induced cellular stress, ER and osmotic stress. In all these conditions the global levels of SUMOylation was significantly increased. These results show the evolutionary conservation of SUMO modifications in reaction to stress. Our analysis showed that SUMO targets are highly conserved throughout species. By comparing the SUMO targets among species, we approximated the total number of proteins modified in a given proteome to be at least 15-20%. We developed a web server designed for convenient prediction of potential SUMO modification based on experimental evidences in other species.

Indexed as

Evolution, MolecularSignal TransductionAnimalsCaenorhabditis elegansComputational BiologyGene ExpressionGene Expression RegulationProtein BindingProtein Interaction MapsProteomeSmall Ubiquitin-Related Modifier ProteinsStress, PhysiologicalSumoylationProteomeSmall Ubiquitin-Related Modifier Proteins

Identifiers

PMID29348603
PMCPMC5773548
OpenAlexW2783915988

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.