Evidence map›Paper›PMID 29348368›Full record

ArticleScience (New York, N.Y.)2018

Defining the physiological role of SRP in protein-targeting efficiency and specificity.

Elizabeth A Costa, Kelly Subramanian, Jodi Nunnari, Jonathan S Weissman

Open access · greenAbstract read
In one paragraph

Article in Science (New York, N.Y.), 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 112 papers.

0numbers the graph read from it
0cells of the map it votes in
112citing papers in PubMed
12.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

112 citing papers in PubMed, 227 citations in OpenAlex.

  1. Article
  2. Article
  3. The isolated HEPN domain of SACSIN exhibits RNA-binding activity.Cellular and molecular life sciences : CMLS · 2026
    Article
  4. Article
  5. Article
  6. Review
  7. SIEVEseq: unified differential expression, variability, and skewness analyses using RNA-Seq data.DNA research : an international journal for rapid publication of reports on genes and genomes · 2026
    Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article

52 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Elizabeth A CostaDepartment of Cellular and Molecular Pharmacology, University of California, San Francisco, CA, USA.ORCID 0000-0001-8365-0436
Kelly SubramanianDepartment of Molecular and Cellular Biology, University of California, Davis, CA, USA.ORCID 0000-0002-7227-9595
Jodi NunnariDepartment of Molecular and Cellular Biology, University of California, Davis, CA, USA.ORCID 0000-0002-2249-8730
Jonathan S WeissmanDepartment of Cellular and Molecular Pharmacology, University of California, San Francisco, CA, USA. jonathan.weissman@ucsf.edu.ORCID 0000-0003-2445-670X
University of California, Davis · USHoward Hughes Medical Institute · USUniversity of California, San Francisco · US

Funding

UC Davis MCB T32 Administrative Supplement to Recognize Excellence in Diversity, Equity, Inclusion, and Accessibility (DEIA) MentorshipT32GM007377 · NIGMS · UNIVERSITY OF CALIFORNIA DAVIS · PI CHEDIN, FREDERIC LOUIS · 1985 to 2023
$9.9M
PROJECT 3P50GM102706 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI CATE, JAMIE H · 2012 to 2016
$9.5M
The Mechanism of Mitochondrial Fission and Fusion.R01GM062942 · NIGMS · UNIVERSITY OF CALIFORNIA DAVIS · PI NUNNARI, JODI M. · 2001 to 2013
$3.9M
Supplement Request for High throughput Image Analysis SystemR37GM097432 · NIGMS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI NUNNARI, JODI M. · 2015 to 2020
$2.4M
Human Gene Knockdowns that May Extend LifespanR01AG041826 · NIA · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI WEISSMAN, JONATHAN S. · 2012 to 2016
$1.6M
Mechanisms controlling mitochondrial division and positioningR01GM097432 · NIGMS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI NUNNARI, JODI M. · 2011 to 2014
$1.2M
Supplement to: PHYSICAL AND FUNCTIONAL SYSTEMS ANALYSIS OF MAMMALIAN MITOCHONDRIAR01GM106019 · NIGMS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI BABU, MOHAN, NUNNARI, JODI M. · 2013 to 2016
$954k
Howard Hughes Medical InstituteNIA NIH HHS R01 AG041826NIGMS NIH HHS P50 GM102706NIGMS NIH HHS R01 GM062942NIGMS NIH HHS R01 GM097432NIGMS NIH HHS R01 GM106019NIGMS NIH HHS R37 GM097432NIGMS NIH HHS T32 GM007377
6 · The paper itself

Abstract

The signal recognition particle (SRP) enables cotranslational delivery of proteins for translocation into the endoplasmic reticulum (ER), but its full in vivo role remains incompletely explored. We combined rapid auxin-induced SRP degradation with proximity-specific ribosome profiling to define SRP's in vivo function in yeast. Despite the classic view that SRP recognizes amino-terminal signal sequences, we show that SRP was generally essential for targeting transmembrane domains regardless of their position relative to the amino terminus. By contrast, many proteins containing cleavable amino-terminal signal peptides were efficiently cotranslationally targeted in SRP's absence. We also reveal an unanticipated consequence of SRP loss: Transcripts normally targeted to the ER were mistargeted to mitochondria, leading to mitochondrial defects. These results elucidate SRP's essential roles in maintaining the efficiency and specificity of protein targeting.

Indexed as

Protein Sorting SignalsEndoplasmic ReticulumIndoleacetic AcidsMitochondriaProtein TransportProteolysisRibosomesRNA, MessengerSaccharomyces cerevisiaeSignal Recognition ParticleIndoleacetic AcidsProtein Sorting SignalsRNA, MessengerSignal Recognition Particle

Identifiers

PMID29348368
PMCPMC5970945
OpenAlexW2784190408

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.