Evidence map›Paper›PMID 29347914›Full record

ArticleBMC genomics2018

In-depth proteomic analysis of boar spermatozoa through shotgun and gel-based methods.

Jean M Feugang, Shengfa F Liao, Scott T Willard, Peter L Ryan

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
4.7field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 30 citations in OpenAlex.

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  5. Protein Identification of Seminal Plasma in Bali Bull (Animals : an open access journal from MDPI · 2023
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  10. Proteomic Analysis of Fresh and Liquid-Stored Boar Spermatozoa.Animals : an open access journal from MDPI · 2020
    Article
  11. Article
  12. Article
  13. The Proteome of Pig Spermatozoa Is Remodeled During Ejaculation.Molecular & cellular proteomics : MCP · 2019
    Article
  14. Proteome changes of porcine follicular fluid during follicle development.Journal of animal science and biotechnology · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Jean M FeugangDepartment of Animal and Dairy Sciences, Mississippi State University, Mississippi State, MS, 39762, USA. jn181@ads.msstate.edu.ORCID 0000-0002-1376-5059
Shengfa F LiaoDepartment of Animal and Dairy Sciences, Mississippi State University, Mississippi State, MS, 39762, USA.
Scott T WillardDepartment of Animal and Dairy Sciences, Mississippi State University, Mississippi State, MS, 39762, USA.
Peter L RyanDepartment of Animal and Dairy Sciences, Mississippi State University, Mississippi State, MS, 39762, USA.
Mississippi State University · US

Funding

Agricultural Research Service 8-6402-3-018
6 · The paper itself

Abstract

backgroundMature spermatozoa contain numerous epididymal and seminal plasma proteins, which full identification through high-throughput technologies may allow for a better understanding of the sperm biology. Therefore, we conducted a global proteomic analysis of boar spermatozoa through shotgun and gel-based methodologies.

resultsThe total proteins were extracted from mature spermatozoa and subjecsted to proteome analyses. Functional analyses of gene ontology representations and pathway enrichments were conducted on the shotgun dataset, followed by immunology and gene expression validations. Shotgun and gel-based approaches allowed the detection of 2728 proteins and 2123 spots, respectively. Approximately 38% and 59% of total proteins were respectively fully and partially annotated, and 3% were unknown. Gene ontology analysis indicated high proportions of proteins associated with intracellular and cytoplasm localizations, protein and nucleic acid binding, hydrolase and transferase activities, and cellular, metabolic, and regulation of biological processes. Proteins associated with phosphorylation processes and mitochondrial membranes, nucleic acid binding, and phosphate and phosphorous metabolics represented 77% of the dataset. Pathways associated with oxidative phosphorylation, citrate cycle, and extra-cellular matrix-receptor interaction were significantly enriched. Protein complex, intracellular organelle, cytoskeletal parts, fertilization and reproduction, and gap junction pathway were significantly enriched within the top 116 highly abundant proteins. Nine randomly selected protein candidates were confirmed with gel-based identification, immunofluorescence detection, and mRNA expression.

conclusionsThis study offers an in-depth proteomic mapping of mature boar spermatozoa that will enable comparative and discovery research for the improvement of male fertility.

Indexed as

AnimalsComputational BiologyElectrophoresis, Gel, Two-DimensionalGene OntologyMaleMass SpectrometryProteomeProteomicsReproductionSemenSeminal Plasma ProteinsSpermatozoaSwineProteomeSeminal Plasma ProteinsFertilityFertilizationSemenSpermadhesinsSwine

Identifiers

PMID29347914
PMCPMC5774113
OpenAlexW2789863324

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.