Evidence map›Paper›PMID 29347346›Full record

ArticlePhysical review. E2017

Elucidating distinct ion channel populations on the surface of hippocampal neurons via single-particle tracking recurrence analysis.

Grzegorz Sikora, Agnieszka Wyłomańska, Janusz Gajda, Laura Solé, Elizabeth J Akin, Michael M Tamkun, Diego Krapf

Open access · greenAbstract read
In one paragraph

Article in Physical review. E, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 41 citations in OpenAlex.

  1. Article
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  7. The NaFrontiers in pharmacology · 2021
    Article
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  9. The MAP1B Binding Domain of NaThe Journal of neuroscience : the official journal of the Society for Neuroscience · 2019
    Article
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  11. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Grzegorz SikoraFaculty of Pure and Applied Mathematics, Hugo Steinhaus Center, Wrocław University of Science and Technology, 50-370 Wrocław, Poland.
Agnieszka WyłomańskaFaculty of Pure and Applied Mathematics, Hugo Steinhaus Center, Wrocław University of Science and Technology, 50-370 Wrocław, Poland.
Janusz GajdaFaculty of Pure and Applied Mathematics, Hugo Steinhaus Center, Wrocław University of Science and Technology, 50-370 Wrocław, Poland.
Laura SoléDepartment of Biomedical Sciences, Colorado State University, Fort Collins, Colorado 80523, USA.
Elizabeth J AkinDepartment of Biomedical Sciences, Colorado State University, Fort Collins, Colorado 80523, USA.
Michael M TamkunDepartment of Biomedical Sciences, Colorado State University, Fort Collins, Colorado 80523, USA.
Diego KrapfDepartment of Electrical and Computer Engineering, Colorado State University, Fort Collins, Colorado 80523, USA.
Colorado State University · USWrocław University of Science and Technology · PLAGH University of Krakow · PL

Funding

High Resolution Optical Analysis of Nav1.6 Localization, Trafficking and FunctionR01NS085142 · NINDS · COLORADO STATE UNIVERSITY · PI TAMKUN, MICHAEL M. · 2013 to 2016
$1.3M
NINDS NIH HHS R01 NS085142
6 · The paper itself

Abstract

Protein and lipid nanodomains are prevalent on the surface of mammalian cells. In particular, it has been recently recognized that ion channels assemble into surface nanoclusters in the soma of cultured neurons. However, the interactions of these molecules with surface nanodomains display a considerable degree of heterogeneity. Here, we investigate this heterogeneity and develop statistical tools based on the recurrence of individual trajectories to identify subpopulations within ion channels in the neuronal surface. We specifically study the dynamics of the K^{+} channel Kv1.4 and the Na^{+} channel Nav1.6 on the surface of cultured hippocampal neurons at the single-molecule level. We find that both these molecules are expressed in two different forms with distinct kinetics with regards to surface interactions, emphasizing the complex proteomic landscape of the neuronal surface. Further, the tools presented in this work provide new methods for the analysis of membrane nanodomains, transient confinement, and identification of populations within single-particle trajectories.

Indexed as

AnimalsCell MembraneCells, CulturedHippocampusImage Processing, Computer-AssistedKv1.4 Potassium ChannelMembrane MicrodomainsMicroscopy, FluorescenceMotionNAV1.6 Voltage-Gated Sodium ChannelNeuronsProteomeRatsTransfectionKv1.4 Potassium ChannelNAV1.6 Voltage-Gated Sodium ChannelProteomeScn8a protein, rat

Identifiers

PMID29347346
PMCPMC6309863
OpenAlexW2744629697

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.