Evidence map›Paper›PMID 29346646›Full record

ArticleMolecular biology and evolution2018

The Evolutionary History of Nebraska Deer Mice: Local Adaptation in the Face of Strong Gene Flow.

Susanne P Pfeifer, Stefan Laurent, Vitor C Sousa, Catherine R Linnen, Matthieu Foll, Laurent Excoffier, Hopi E Hoekstra, Jeffrey D Jensen

Erratum issuedOpen access · hybridAbstract read
In one paragraph

Article in Molecular biology and evolution, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
9.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 83 citations in OpenAlex.

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  11. Local adaptation: Causal agents of selection and adaptive trait divergence.Annual review of ecology, evolution, and systematics · 2022
    Article
  12. Evolutionary Genomics of a Subdivided Species.Molecular biology and evolution · 2022
    Article
  13. An enhancer ofProceedings of the National Academy of Sciences of the United States of America · 2022
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  14. Article
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  16. The response of a metapopulation to a changing environment.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2022
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 3 countries.

Susanne P PfeiferSchool of Life Sciences, Ecole Polytechnique Fédérale de Lausanne, Lausanne, Switzerland.
Stefan LaurentSchool of Life Sciences, Ecole Polytechnique Fédérale de Lausanne, Lausanne, Switzerland.
Vitor C SousaInstitute of Ecology & Evolution, University of Berne, Berne, Switzerland.
Catherine R LinnenDepartment of Biology, University of Kentucky, Lexington, KY.
Matthieu FollSchool of Life Sciences, Ecole Polytechnique Fédérale de Lausanne, Lausanne, Switzerland.
Laurent ExcoffierInstitute of Ecology & Evolution, University of Berne, Berne, Switzerland.
Hopi E HoekstraDepartment of Organismic & Evolutionary Biology and Molecular & Cellular Biology, Museum of Comparative Zoology, Howard Hughes Medical Institute, Harvard University, Cambridge, MA.
Jeffrey D JensenSchool of Life Sciences, Ecole Polytechnique Fédérale de Lausanne, Lausanne, Switzerland.
École Polytechnique Fédérale de Lausanne · CHUniversity of Bern · CHHoward Hughes Medical Institute · USUniversity of Kentucky · US

Funding

Howard Hughes Medical Institute
6 · The paper itself

Abstract

The interplay of gene flow, genetic drift, and local selective pressure is a dynamic process that has been well studied from a theoretical perspective over the last century. Wright and Haldane laid the foundation for expectations under an island-continent model, demonstrating that an island-specific beneficial allele may be maintained locally if the selection coefficient is larger than the rate of migration of the ancestral allele from the continent. Subsequent extensions of this model have provided considerably more insight. Yet, connecting theoretical results with empirical data has proven challenging, owing to a lack of information on the relationship between genotype, phenotype, and fitness. Here, we examine the demographic and selective history of deer mice in and around the Nebraska Sand Hills, a system in which variation at the Agouti locus affects cryptic coloration that in turn affects the survival of mice in their local habitat. We first genotyped 250 individuals from 11 sites along a transect spanning the Sand Hills at 660,000 single nucleotide polymorphisms across the genome. Using these genomic data, we found that deer mice first colonized the Sand Hills following the last glacial period. Subsequent high rates of gene flow have served to homogenize the majority of the genome between populations on and off the Sand Hills, with the exception of the Agouti pigmentation locus. Furthermore, mutations at this locus are strongly associated with the pigment traits that are strongly correlated with local soil coloration and thus responsible for cryptic coloration.

Indexed as

Adaptation, BiologicalBiological EvolutionGene FlowAnimal MigrationAnimalsPeromyscusPhenotypePigmentation

Identifiers

PMID29346646
PMCPMC5905656
OpenAlexW2952389261

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.