Evidence map›Paper›PMID 29345613›Full record

ArticleMicrobial genomics2018

Comparative transcriptomics of Aspergillus fumigatus strains upon exposure to human airway epithelial cells.

Tonya N Watkins, Hong Liu, Matthew Chung, Tracy H Hazen, Julie C Dunning Hotopp, Scott G Filler, Vincent M Bruno

Abstract read
In one paragraph

Article in Microbial genomics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Accelerating the understanding ofCurrent research in microbial sciences · 2024
    Review
  6. Review
  7. Article
  8. The Transcriptome Response to Azole Compounds inJournal of fungi (Basel, Switzerland) · 2023
    Article
  9. Review
  10. Article
  11. Rapid Detection ofFrontiers in cellular and infection microbiology · 2021
    Article
  12. Article
  13. Molecular Mechanisms of Conidial Germination inMicrobiology and molecular biology reviews : MMBR · 2020
    Review
  14. EphA2-Dependent Internalization ofFrontiers in microbiology · 2020
    Article
  15. Article
  16. Structure-guided function discovery of an NRPS-like glycine betaine reductase for choline biosynthesis in fungi.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Tonya N Watkins1​Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA.
Hong Liu2​Division of Infectious Diseases, Los Angeles Biomedical Research Institute at Harbor-UCLA Medical Center, Torrance, CA, USA.
Matthew Chung1​Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA.
Tracy H Hazen1​Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA.
Julie C Dunning Hotopp1​Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA.
Scott G Filler2​Division of Infectious Diseases, Los Angeles Biomedical Research Institute at Harbor-UCLA Medical Center, Torrance, CA, USA.
Vincent M Bruno1​Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA.

Funding

Technology CoreU19AI110820 · NIAID · UNIVERSITY OF MARYLAND BALTIMORE · PI DUNNING HOTOPP, JULIE · 2014 to 2023
$36.5M
NIAID NIH HHS U19 AI110820
6 · The paper itself

Abstract

Aspergillus fumigatus is an opportunistic, ubiquitous, saprophytic mould that can cause severe allergic responses in atopic individuals as well as life-threatening infections in immunocompromised patients. A critical step in the establishment of infection is the invasion of airway epithelial cells by the inhaled fungi. Understanding how A. fumigatus senses and responds to airway cells is important to understand the pathogenesis of invasive pulmonary aspergillosis. Here, we analysed the transcriptomes of two commonly used clinical isolates, Af293 and CEA10, during infection of the A549 type II pneumocyte cell line in vitro. We focused our RNA-seq analysis on the core set of genes that are present in the genomes of the two strains. Our results suggest that: (a) A. fumigatus does not mount a conserved transcriptional response to airway epithelial cells in our in vitro model and (b) strain background and time spent in the tissue culture media have a greater impact on the transcriptome than the presence of host cells. Our analyses reveal both common and strain-specific transcriptional programmes that allow for the generation of hypotheses about gene function as it pertains to pathogenesis and the significant phenotypic heterogeneity that is observed among A. fumigatus isolates.

Indexed as

TranscriptomeA549 CellsAlveolar Epithelial CellsAspergillus fumigatusEpithelial CellsGene Expression Regulation, FungalGenes, FungalHost-Pathogen InteractionsHumansPhenotypePulmonary AspergillosisRespiratory SystemSequence AnalysisSpores, FungalAf293airway epithelial cellsAspergillus fumigatusCEA10RNA-seq

Identifiers

PMID29345613
PMCPMC5857381

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.