Evidence map›Paper›PMID 29343643›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2018

Pyridoxal-5'-phosphate as an oxygenase cofactor: Discovery of a carboxamide-forming, α-amino acid monooxygenase-decarboxylase.

Ying Huang, Xiaodong Liu, Zheng Cui, Daniel Wiegmann, Giuliana Niro, Christian Ducho, Yuan Song, Zhaoyong Yang, Steven G Van Lanen

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
  2. Biosynthesis and Genome Mining Potentials of Nucleoside Natural Products.Chembiochem : a European journal of chemical biology · 2023
    Article
  3. Article
  4. A shared mechanistic pathway for pyridoxal phosphate-dependent arginine oxidases.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  5. Review
  6. Article
  7. Review
  8. Pyridoxal-5'-phosphate-dependent bifunctional enzyme catalyzed biosynthesis of indolizidine alkaloids in fungi.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  9. Review
  10. Article
  11. Review
  12. Review
  13. Review
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 3 countries.

Ying HuangDepartment of Pharmaceutical Sciences, University of Kentucky, Lexington, KY 40536.
Xiaodong LiuDepartment of Pharmaceutical Sciences, University of Kentucky, Lexington, KY 40536.
Zheng CuiDepartment of Pharmaceutical Sciences, University of Kentucky, Lexington, KY 40536.
Daniel WiegmannDepartment of Pharmacy, Pharmaceutical and Medicinal Chemistry, Saarland University, 66123 Saarbrücken, Germany.
Giuliana NiroDepartment of Pharmacy, Pharmaceutical and Medicinal Chemistry, Saarland University, 66123 Saarbrücken, Germany.
Christian DuchoDepartment of Pharmacy, Pharmaceutical and Medicinal Chemistry, Saarland University, 66123 Saarbrücken, Germany.
Yuan SongDepartment of Microbiology, College of Biological Sciences, China Agricultural University, Beijing 100094, People's Republic of China.
Zhaoyong YangInstitute of Medicinal Biotechnology, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing 100050, People's Republic of China zhaoyongy@163.com svanlanen@uky.edu.
Steven G Van LanenDepartment of Pharmaceutical Sciences, University of Kentucky, Lexington, KY 40536; zhaoyongy@163.com svanlanen@uky.edu.
University of Kentucky · USSaarland University · DEChina Agricultural University · CNChinese Academy of Medical Sciences & Peking Union Medical College · CN

Funding

Biosynthesis of nucleoside antibiotics targeting bacterial translocase IR01AI087849 · NIAID · UNIVERSITY OF KENTUCKY · PI VAN LANEN, STEVEN GARY · 2011 to 2020
$3.3M
Biosynthesis and medicinal chemistry of the capuramycin antimycobacterial antibioticsR01AI128862 · NIAID · UNIVERSITY OF KENTUCKY · PI THORSON, JON SCOTT, VAN LANEN, STEVEN GARY · 2017 to 2021
$1.0M
NIAID NIH HHS R01 AI087849NIAID NIH HHS R01 AI128862
6 · The paper itself

Abstract

Capuramycins are antimycobacterial antibiotics that consist of a modified nucleoside named uridine-5'-carboxamide (CarU). Previous biochemical studies have revealed that CarU is derived from UMP, which is first converted to uridine-5'-aldehyde in a reaction catalyzed by the dioxygenase CapA and subsequently to 5'-C-glycyluridine (GlyU), an unusual β-hydroxy-α-amino acid, in a reaction catalyzed by the pyridoxal-5'-phosphate (PLP)-dependent transaldolase CapH. The remaining steps that are necessary to furnish CarU include decarboxylation, O atom insertion, and oxidation. We demonstrate that Cap15, which has sequence similarity to proteins annotated as bacterial, PLP-dependent l-seryl-tRNA(Sec) selenium transferases, is the sole catalyst responsible for complete conversion of GlyU to CarU. Using a complementary panel of in vitro assays, Cap15 is shown to be dependent upon substrates O

Indexed as

Amino Acid SequenceAmino Acid SubstitutionAminoglycosidesAnti-Bacterial AgentsBacterial ProteinsCoenzymesGenes, BacterialMixed Function OxygenasesModels, MolecularMutagenesis, Site-DirectedOxygenasesPyridoxal PhosphateRecombinant ProteinsSequence Homology, Amino AcidAminoglycosidesAnti-Bacterial AgentsBacterial ProteinscapuramycinCoenzymesMixed Function OxygenasesOxygenasesPyridoxal PhosphateRecombinant Proteinsantibioticbiosynthesisenzyme functionnatural products

Identifiers

PMID29343643
PMCPMC5798378
OpenAlexW2783598163

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.