Evidence map›Paper›PMID 29343239›Full record

ArticleBMC plant biology2018

Calcium-dependent protein kinases in cotton: insights into early plant responses to salt stress.

Wei Gao, Fu-Chun Xu, Dan-Dan Guo, Jing-Ruo Zhao, Ji Liu, Ya-Wei Guo, Prashant Kumar Singh, Xiao-Nan Ma, Lu Long, Jose Ramon Botella and 1 more

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
25.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 99 citations in OpenAlex.

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  15. Identification of Raf-Like Kinases B Subfamily Genes inInternational journal of molecular sciences · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Wei GaoState Key Laboratory of Cotton Biology; Henan Key Laboratory of Plant Stress Biology; School of Life Science, Henan University, Kaifeng, Henan, 475004, People's Republic of China.
Fu-Chun XuState Key Laboratory of Cotton Biology; Henan Key Laboratory of Plant Stress Biology; School of Life Science, Henan University, Kaifeng, Henan, 475004, People's Republic of China.
Dan-Dan GuoState Key Laboratory of Cotton Biology; Henan Key Laboratory of Plant Stress Biology; School of Life Science, Henan University, Kaifeng, Henan, 475004, People's Republic of China.
Jing-Ruo ZhaoState Key Laboratory of Cotton Biology; Henan Key Laboratory of Plant Stress Biology; School of Life Science, Henan University, Kaifeng, Henan, 475004, People's Republic of China.
Ji LiuState Key Laboratory of Cotton Biology, Institute of Cotton Research of CAAS, Anyang, 455000, People's Republic of China.
Ya-Wei GuoState Key Laboratory of Cotton Biology; Henan Key Laboratory of Plant Stress Biology; School of Life Science, Henan University, Kaifeng, Henan, 475004, People's Republic of China.
Prashant Kumar SinghState Key Laboratory of Cotton Biology; Henan Key Laboratory of Plant Stress Biology; School of Life Science, Henan University, Kaifeng, Henan, 475004, People's Republic of China.
Xiao-Nan MaState Key Laboratory of Cotton Biology; Henan Key Laboratory of Plant Stress Biology; School of Life Science, Henan University, Kaifeng, Henan, 475004, People's Republic of China.
Lu LongState Key Laboratory of Cotton Biology; Henan Key Laboratory of Plant Stress Biology; School of Life Science, Henan University, Kaifeng, Henan, 475004, People's Republic of China.
Jose Ramon BotellaSchool of Agriculture and Food Sciences, University of Queensland, Brisbane, QLD 4072, Australia.
Chun-Peng SongState Key Laboratory of Cotton Biology; Henan Key Laboratory of Plant Stress Biology; School of Life Science, Henan University, Kaifeng, Henan, 475004, People's Republic of China. songcp@henu.edu.cn.
Cotton Research Institute · CNState Key Laboratory of Cotton BiologyHenan University · CNUniversity of Queensland · AU

Funding

Ministry of Agriculture of the People's Republic of China (CN) 2016ZX08009-003National Key R&D Project for Crop Breeding 2016YFD0101006National Natural Science Foundation of China 31601344National Natural Science Foundation of China 31701473
6 · The paper itself

Abstract

backgroundSoil salinization is one of the major environmental constraints to plant growth and agricultural production worldwide. Signaling components involving calcium (Ca

resultsA total of 98 predicted CPKs were identified from upland cotton (Gossypium hirsutum L. 'TM-1'), and phylogenetic analyses classified them into four groups. Gene family distribution studies have revealed the substantial impacts of the genome duplication events to the total number of GhCPKs. Transcriptome analyses showed a wide distribution of CPKs' expression among different organs. A total of 19 CPKs were selected for their rapid responses to salt stress at the transcriptional level, most of which were also incduced by the thylene-releasing chemical ethephon, suggesting a partal overlap of the salinity and ethylene responses. Silencing of 4 of the 19 CPKs (GhCPK8, GhCPK38, GhCPK54, and GhCPK55) severely compromised the basal cotton resistance to salt stress.

conclusionsOur genome-wide expression analysis of CPK genes from up-land cotton suggests that CPKs are involved in multiple developmental responses as well as the response to different abiotic stresses. A cluster of the cotton CPKs was shown to participate in the early signaling events in cotton responses to salt stress. Our results provide significant insights on functional analysis of CPKs in cotton, especially in the context of cotton adaptions to salt stress.

Indexed as

SalinityCalcium-Calmodulin-Dependent Protein KinasesGene SilencingGossypiumMultigene FamilyPhylogenyPlant ProteinsProtein KinasesStress, PhysiologicalCalcium-Calmodulin-Dependent Protein KinasesPlant ProteinsProtein KinasesCalcium dependent protein kinaseGenome-wide identificationGossypium hirsutumTranscriptomeVirus-induced gene silencing

Identifiers

PMID29343239
PMCPMC5772696
OpenAlexW2795044117

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.