Evidence map›Paper›PMID 29342213›Full record

ArticlePloS one2018

Circulating neutrophil transcriptome may reveal intracranial aneurysm signature.

Vincent M Tutino, Kerry E Poppenberg, Kaiyu Jiang, James N Jarvis, Yijun Sun, Ashish Sonig, Adnan H Siddiqui, Kenneth V Snyder, Elad I Levy, John Kolega and 1 more

Abstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Vincent M TutinoToshiba Stroke and Vascular Research Center; University at Buffalo, State University of New York, Buffalo, New York, United States of America.
Kerry E PoppenbergToshiba Stroke and Vascular Research Center; University at Buffalo, State University of New York, Buffalo, New York, United States of America.
Kaiyu JiangGenetics, Genomics, and Bioinformatics Program, University at Buffalo, State University of New York, Buffalo, New York, United States of America.
James N JarvisGenetics, Genomics, and Bioinformatics Program, University at Buffalo, State University of New York, Buffalo, New York, United States of America.
Yijun SunDepartment of Microbiology and Immunology, University at Buffalo, State University of New York, Buffalo, New York, United States of America.
Ashish SonigToshiba Stroke and Vascular Research Center; University at Buffalo, State University of New York, Buffalo, New York, United States of America.
Adnan H SiddiquiToshiba Stroke and Vascular Research Center; University at Buffalo, State University of New York, Buffalo, New York, United States of America.
Kenneth V SnyderToshiba Stroke and Vascular Research Center; University at Buffalo, State University of New York, Buffalo, New York, United States of America.
Elad I LevyToshiba Stroke and Vascular Research Center; University at Buffalo, State University of New York, Buffalo, New York, United States of America.
John KolegaToshiba Stroke and Vascular Research Center; University at Buffalo, State University of New York, Buffalo, New York, United States of America.
Hui MengToshiba Stroke and Vascular Research Center; University at Buffalo, State University of New York, Buffalo, New York, United States of America.ORCID 0000-0003-3884-499X

Funding

University of Buffalo Clinical and Translational Science Institute - Supplement SchulyerUL1TR001412 · NCATS · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI MURPHY, TIMOTHY F · 2015 to 2024
$33.8M
Microarray-Based Biomarkers in Juvenile Idiopathic ArthritisR01AR060604 · NIAMS · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI JARVIS, JAMES N · 2011 to 2015
$2.6M
Developing Advanced Algorithms to Address Major Computational Challenges in Current Microbiome ResearchR01AI125982 · NIAID · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI SUN, YIJUN · 2016 to 2018
$973k
NCATS NIH HHS UL1 TR001412NIAID NIH HHS R01 AI125982NIAMS NIH HHS R01 AR060604NIH HHS R01-AR-060604
6 · The paper itself

Abstract

backgroundUnruptured intracranial aneurysms (IAs) are typically asymptomatic and undetected except for incidental discovery on imaging. Blood-based diagnostic biomarkers could lead to improvements in IA management. This exploratory study examined circulating neutrophils to determine whether they carry RNA expression signatures of IAs.

methodsBlood samples were collected from patients receiving cerebral angiography. Eleven samples were collected from patients with IAs and 11 from patients without IAs as controls. Samples from the two groups were paired based on demographics and comorbidities. RNA was extracted from isolated neutrophils and subjected to next-generation RNA sequencing to obtain differential expressions for identification of an IA-associated signature. Bioinformatics analyses, including gene set enrichment analysis and Ingenuity Pathway Analysis, were used to investigate the biological function of all differentially expressed transcripts.

resultsTranscriptome profiling identified 258 differentially expressed transcripts in patients with and without IAs. Expression differences were consistent with peripheral neutrophil activation. An IA-associated RNA expression signature was identified in 82 transcripts (p<0.05, fold-change ≥2). This signature was able to separate patients with and without IAs on hierarchical clustering. Furthermore, in an independent, unpaired, replication cohort of patients with IAs (n = 5) and controls (n = 5), the 82 transcripts separated 9 of 10 patients into their respective groups.

conclusionPreliminary findings show that RNA expression from circulating neutrophils carries an IA-associated signature. These findings highlight a potential to use predictive biomarkers from peripheral blood samples to identify patients with IAs.

Indexed as

AgedAged, 80 and overAneurysm, RupturedBiomarkersCerebral AngiographyCohort StudiesComputational BiologyFemaleGene Expression ProfilingHumansIntracranial AneurysmMaleMiddle AgedNeutrophilsRisk FactorsTranscriptomeBiomarkers

Identifiers

PMID29342213
PMCPMC5771622

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.