Evidence map›Paper›PMID 29340841›Full record

ArticleWorld journal of microbiology & biotechnology2018

An efficient gene disruption method using a positive-negative split-selection marker and Agrobacterium tumefaciens-mediated transformation for Nomuraea rileyi.

Yu Su, Zhongkang Wang, Changwen Shao, Yuanli Luo, Li Wang, Youping Yin

Abstract read
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In one paragraph

Article in World journal of microbiology & biotechnology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.5field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 4 citations in OpenAlex.

  1. The Catalase GeneJournal of fungi (Basel, Switzerland) · 2024
    Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Yu SuSchool of Life Science, Chongqing University, Chongqing, 400030, China.
Zhongkang WangSchool of Life Science, Chongqing University, Chongqing, 400030, China.
Changwen ShaoCollege of Agriculture and Forestry, Linyi University, Linyi, 276000, China.
Yuanli LuoSoutheast Chongqing Academy of Agricultural Sciences, Chongqing, 408000, China.
Li WangSchool of Life Science, Chongqing University, Chongqing, 400030, China.
Youping YinSchool of Life Science, Chongqing University, Chongqing, 400030, China. ypy128@vip.sina.com.
Chongqing University · CNChongqing Academy of Agricultural Sciences · CNLinyi University · CN

Funding

Agro-Scientific Research in the Public Interest Project No. 201103002National High Technique Program (863) of China Project No. 2011AA10A201
6 · The paper itself

Abstract

Targeted gene disruption via Agrobacterium tumefaciens-mediated transformation (ATMT) and homologous recombination is the most common method used to identify and investigate the functions of genes in fungi. However, the gene disruption efficiency of this method is low due to ectopic integration. In this study, a high-efficiency gene disruption strategy based on ATMT and the split-marker method was developed for use in Nomuraea rileyi. The β-glucuronidase (gus) gene was used as a negative selection marker to facilitate the screening of putative transformants. We assessed the efficacy of this gene disruption method using the NrCat1, NrCat4, and NrPex16 genes and found that the targeting efficiency was between 36.2 and 60.7%, whereas the targeting efficiency using linear cassettes was only 1.0-4.2%. The efficiency of negative selection assays was between 64.1 and 82.3%. Randomly selected deletion mutants exhibited a single copy of the hph cassette. Therefore, high-throughput gene disruption could be possible using the split-marker method and the majority of ectopic integration transformants can be eliminated using negative selection markers. This study provides a platform to study the function of genes in N. rileyi.

Indexed as

BiomarkersAgrobacterium tumefaciensDNA, BacterialFungal ProteinsGenes, BacterialGenes, FungalGenetic EngineeringGenetic VectorsGlucuronidaseMembrane ProteinsMetarhiziumMutagenesis, InsertionalProtein Serine-Threonine KinasesSequence DeletionTransformation, GeneticBiomarkersDNA, BacterialFungal ProteinsGlucuronidaseMembrane ProteinsProtein Serine-Threonine KinasesAgrobacterium tumefaciens-mediated transformation (ATMT)Negative selection markerNomuraea rileyiSplit-markerβ-Glucuronidase

Identifiers

PMID29340841
OpenAlexW2783429846

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.