Evidence map›Paper›PMID 29338710›Full record

ArticleBMC biology2018

A genetically encoded Ca

Yi Shen, Hod Dana, Ahmed S Abdelfattah, Ronak Patel, Jamien Shea, Rosana S Molina, Bijal Rawal, Vladimir Rancic, Yu-Fen Chang, Lanshi Wu and 11 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in BMC biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 78 papers.

0numbers the graph read from it
0cells of the map it votes in
78citing papers in PubMed
6.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

78 citing papers in PubMed, 136 citations in OpenAlex.

  1. Host-derived stimuli alter intracellular calcium levels inApplied and environmental microbiology · 2026
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  9. CRISPR/Cas9-mediatedFrontiers in physiology · 2026
    Article
  10. Review
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  19. A novel protein for bioremediation of gadolinium waste.Protein science : a publication of the Protein Society · 2025
    Article
  20. Article

18 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

21 authors at 3 institutions in 2 countries.

Yi ShenDepartment of Chemistry, University of Alberta, Edmonton, Alberta, T6G 2G2, Canada.
Hod DanaJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, 20147, USA.
Ahmed S AbdelfattahDepartment of Chemistry, University of Alberta, Edmonton, Alberta, T6G 2G2, Canada.
Ronak PatelJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, 20147, USA.
Jamien SheaJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, 20147, USA.
Rosana S MolinaDepartment of Cell Biology and Neuroscience, Montana State University, Bozeman, MT, 59717, USA.
Bijal RawalDepartment of Physiology, University of Alberta, Edmonton, Alberta, T6G 2H7, Canada.
Vladimir RancicDepartment of Physiology, University of Alberta, Edmonton, Alberta, T6G 2H7, Canada.
Yu-Fen ChangLumiSTAR Biotechnology Incorporation, Nangang District, Taipei City, 115, Taiwan.
Lanshi WuDepartment of Chemistry, University of Alberta, Edmonton, Alberta, T6G 2G2, Canada.
Yingche ChenDepartment of Chemistry, University of Alberta, Edmonton, Alberta, T6G 2G2, Canada.
Yong QianDepartment of Chemistry, University of Alberta, Edmonton, Alberta, T6G 2G2, Canada.
Matthew D WiensDepartment of Chemistry, University of Alberta, Edmonton, Alberta, T6G 2G2, Canada.
Nathan HambletonDepartment of Chemistry, University of Alberta, Edmonton, Alberta, T6G 2G2, Canada.
Klaus BallanyiDepartment of Physiology, University of Alberta, Edmonton, Alberta, T6G 2H7, Canada.
Thomas E HughesDepartment of Cell Biology and Neuroscience, Montana State University, Bozeman, MT, 59717, USA.
Mikhail DrobizhevDepartment of Cell Biology and Neuroscience, Montana State University, Bozeman, MT, 59717, USA.
Douglas S KimJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, 20147, USA.
Minoru KoyamaJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, 20147, USA.
Eric R SchreiterJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, 20147, USA.
Robert E CampbellDepartment of Chemistry, University of Alberta, Edmonton, Alberta, T6G 2G2, Canada. rc4@ualberta.ca.ORCID http://orcid.org/0000-0003-0604-092X
University of Alberta · CAHoward Hughes Medical Institute · USMontana State University · US

Funding

Northern Lights collaboration for better 2-photon probesU01NS094246 · NINDS · MONTANA STATE UNIVERSITY - BOZEMAN · PI CAMPBELL, ROBERT E., DROBIZHEV, MIKHAIL · 2015 to 2017
$2.0M
Development of Protein-based Voltage ProbesU01NS090565 · NINDS · JOHN B. PIERCE LABORATORY, INC. · PI PIERIBONE, VINCENT A · 2014 to 2016
$1.7M
CIHR MOP-123514NIH HHS U01 NS094246NINDS NIH HHS U01 NS090565NINDS NIH HHS U01 NS094246
6 · The paper itself

Abstract

backgroundGenetically encoded calcium ion (Ca

resultsHere we report the development, structure, and validation of a new RFP-based GECI, K-GECO1, based on a circularly permutated RFP derived from the sea anemone Entacmaea quadricolor. We have characterized the performance of K-GECO1 in cultured HeLa cells, dissociated neurons, stem-cell-derived cardiomyocytes, organotypic brain slices, zebrafish spinal cord in vivo, and mouse brain in vivo.

conclusionK-GECO1 is the archetype of a new lineage of GECIs based on the RFP eqFP578 scaffold. It offers high sensitivity and fast kinetics, similar or better than those of current state-of-the-art indicators, with diminished lysosomal accumulation and minimal blue-light photoactivation. Further refinements of the K-GECO1 lineage could lead to further improved variants with overall performance that exceeds that of the most highly optimized red GECIs.

Indexed as

AnimalsCalciumCells, CulturedCrystallographyHeLa CellsHumansLuminescent AgentsLuminescent ProteinsMiceOrgan Culture TechniquesProtein Structure, SecondaryRatsRed Fluorescent ProteinSea AnemonesZebrafishCalciumLuminescent AgentsLuminescent ProteinsRed Fluorescent Protein

Identifiers

PMID29338710
PMCPMC5771076
OpenAlexW2952425397

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.