Evidence map›Paper›PMID 29338056›Full record

ArticlePloS one2018

Context-dependent autoprocessing of human immunodeficiency virus type 1 protease precursors.

ChihFeng Tien, Liangqun Huang, Susan M Watanabe, Jordan T Speidel, Carol A Carter, Chaoping Chen

Abstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

ChihFeng TienDepartment of Biochemistry and Molecular Biology, Colorado State University, Fort Collins, Colorado, United States of America.
Liangqun HuangDepartment of Biochemistry and Molecular Biology, Colorado State University, Fort Collins, Colorado, United States of America.
Susan M WatanabeDepartment of Molecular Genetics and Microbiology, Stony Brook University, Stony Brook, New York, United States of America.
Jordan T SpeidelDepartment of Biochemistry and Molecular Biology, Colorado State University, Fort Collins, Colorado, United States of America.
Carol A CarterDepartment of Molecular Genetics and Microbiology, Stony Brook University, Stony Brook, New York, United States of America.
Chaoping ChenDepartment of Biochemistry and Molecular Biology, Colorado State University, Fort Collins, Colorado, United States of America.ORCID 0000-0001-9387-6252

Funding

Cellular Protein Involved in Trafficking of HIV-1R01GM111028 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI CARTER, CAROL A · 2013 to 2019
$2.0M
Cellular Protein Involved in Trafficking of HIV-1R01AI150489 · NIAID · STATE UNIVERSITY NEW YORK STONY BROOK · PI CARTER, CAROL A · 2020 to 2022
$1.2M
Assay Development for Identification of HIV-1 Protease Autoprocessing Specific InhibitorsR01AI120365 · NIAID · COLORADO STATE UNIVERSITY · PI CHEN, CHAOPING, LABARBERA, DANIEL V. · 2016 to 2018
$1.1M
Assay Optimization for Identification of Novel HIV-1 Protease Autoprocessing InhiR03AI108392 · NIAID · COLORADO STATE UNIVERSITY · PI CHEN, CHAOPING · 2014 to 2015
$149k
NIAID NIH HHS R01 AI120365NIAID NIH HHS R01 AI150489NIAID NIH HHS R03 AI108392NIGMS NIH HHS R01 GM111028
6 · The paper itself

Abstract

HIV-1 protease autoprocessing is responsible for liberation of free mature protease (PR) from the Gag-Pol polyprotein precursor. A cell-based model system was previously developed to examine the autoprocessing mechanism of fusion precursors carrying the p6*-PR miniprecursor sandwiched between various proteins or epitopes. We here report that precursor autoprocessing is context-dependent as its activity and outcomes can be modulated by sequences upstream of p6*-PR. This was exemplified by the 26aa maltose binding protein (MBP) signal peptide (SigP) when placed at the N-terminus of a fusion precursor. The mature PRs released from SigP-carrying precursors are resistant to self-degradation whereas those released from SigP-lacking fusion precursors are prone to self-degradation. A H69D mutation in PR abolished autoprocessing of SigP-containing fusion precursors whereas it only partially suppressed autoprocessing of fusion precursors lacking SigP. An autoprocessing deficient GFP fusion precursor with SigP exhibited a subcellular distribution pattern distinct from the one without it in transfected HeLa cells. Furthermore, a SigP fusion precursor carrying a substitution at the P1 position released the mature PR and PR-containing fragments that were different from those released from the precursor carrying the same mutation but lacking SigP. We also examined autoprocessing outcomes in viral particles produced by a NL4-3 derived proviral construct and demonstrated the existence of several PR-containing fragments along with the mature PR. Some of these resembled the SigP precursor autoprocessing outcomes. This finding of context-dependent modulation reveals the complexity of precursor autoprocessing regulation that most likely accompanies sequence variation imposed by the evolution of the upstream Gag moiety.

Indexed as

Amino Acid SequenceEnzyme PrecursorsHEK293 CellsHIV-1HIV ProteaseHumansMutationEnzyme PrecursorsHIV Proteasep16 protease, Human immunodeficiency virus 1

Identifiers

PMID29338056
PMCPMC5770051

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.