ArticlePloS one2018
Comparative genomics identifies distinct lineages of S. Enteritidis from Queensland, Australia.
Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.
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18 citing papers in PubMed, 28 citations in OpenAlex.
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- Implementation of routine genomic surveillance provided insights into a locally acquired outbreak caused by a rare clade ofMicrobial genomics · 2023Article
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- Genomic Epidemiology and Multilevel Genome Typing of Australian Salmonella enterica Serovar Enteritidis.Microbiology spectrum · 2023Article
- Characterisation ofInternational journal of environmental research and public health · 2022Article
- Antimicrobial resistance genes, virulence markers and prophage sequences inCurrent research in microbial sciences · 2022Article
- Virulence Gene Profile, Antimicrobial Resistance and Multilocus Sequence Typing ofAnimals : an open access journal from MDPI · 2022Article
- Genomic diversity of antimicrobial resistance in non-typhoidalMicrobial genomics · 2021Article
- Elucidation of global and national genomic epidemiology ofMicrobial genomics · 2021Article
- Discerning the Antimicrobial Resistance, Virulence, and Phylogenetic Relatedness ofFrontiers in microbiology · 2021Article
- Complete microbial genomes for public health in Australia and the Southwest Pacific.Microbial genomics · 2020Article
- Genomic diversity ofWellcome open research · 2020Article
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Authors and funding
4 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Salmonella enterica is a major cause of gastroenteritis and foodborne illness in Australia where notification rates in the state of Queensland are the highest in the country. S. Enteritidis is among the five most common serotypes reported in Queensland and it is a priority for epidemiological surveillance due to concerns regarding its emergence in Australia. Using whole genome sequencing, we have analysed the genomic epidemiology of 217 S. Enteritidis isolates from Queensland, and observed that they fall into three distinct clades, which we have differentiated as Clades A, B and C. Phage types and MLST sequence types differed between the clades and comparative genomic analysis has shown that each has a unique profile of prophage and genomic islands. Several of the phage regions present in the S. Enteritidis reference strain P125109 were absent in Clades A and C, and these clades also had difference in the presence of pathogenicity islands, containing complete SPI-6 and SPI-19 regions, while P125109 does not. Antimicrobial resistance markers were found in 39 isolates, all but one of which belonged to Clade B. Phylogenetic analysis of the Queensland isolates in the context of 170 international strains showed that Queensland Clade B isolates group together with the previously identified global clade, while the other two clades are distinct and appear largely restricted to Australia. Locally sourced environmental isolates included in this analysis all belonged to Clades A and C, which is consistent with the theory that these clades are a source of locally acquired infection, while Clade B isolates are mostly travel related.
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