Evidence map›Paper›PMID 29337541›Full record

ArticleBiochemistry2018

Enzyme Architecture: The Role of a Flexible Loop in Activation of Glycerol-3-phosphate Dehydrogenase for Catalysis of Hydride Transfer.

Rui He, Archie C Reyes, Tina L Amyes, John P Richard

Open access · bronzeAbstract read
In one paragraph

Article in Biochemistry, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.5field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 29 citations in OpenAlex.

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  14. Mechanisms of ligand binding.Biophysics reviews · 2020
    Review
  15. Article
  16. Article
  17. Review
  18. Protein Flexibility and Stiffness Enable Efficient Enzymatic Catalysis.Journal of the American Chemical Society · 2019
    Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Rui HeDepartment of Chemistry , University at Buffalo, SUNY , Buffalo , New York 14260-3000 , United States.
Archie C ReyesDepartment of Chemistry , University at Buffalo, SUNY , Buffalo , New York 14260-3000 , United States.ORCID 0000-0001-9955-393X
Tina L AmyesDepartment of Chemistry , University at Buffalo, SUNY , Buffalo , New York 14260-3000 , United States.
John P RichardDepartment of Chemistry , University at Buffalo, SUNY , Buffalo , New York 14260-3000 , United States.ORCID 0000-0002-0440-2387
University at Buffalo, State University of New York · US

Funding

Activation of Enzymes for Catalysis: The Role of Substrate-Induced Structural ChangesR01GM116921 · NIGMS · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI RICHARD, JOHN P · 2016 to 2019
$1.3M
NIGMS NIH HHS R01 GM116921
6 · The paper itself

Abstract

The side chain of Q295 of glycerol-3-phosphate dehydrogenase from human liver ( hlGPDH) lies in a flexible loop, that folds over the phosphodianion of substrate dihydroxyacetone phosphate (DHAP). Q295 interacts with the side-chain cation from R269, which is ion-paired to the substrate phosphodianion. Kinetic parameters k

Indexed as

Glycerolphosphate DehydrogenaseModels, ChemicalMutation, MissenseAmino Acid SubstitutionEnzyme ActivationHumansLiverProtein Structure, SecondaryGlycerolphosphate Dehydrogenase

Identifiers

PMID29337541
PMCPMC6001809
OpenAlexW2783195348

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.