ArticleScientific data2018
Complete genome sequencing of the luminescent bacterium, Vibrio qinghaiensis sp. Q67 using PacBio technology.
Article in Scientific data, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.
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Who cites it
7 citing papers in PubMed.
- Predicting the Time-Dependent Toxicities of Binary Mixtures of Five Antibiotics toEnvironment & health (Washington, D.C.) · 2024Article
- Cellular differentiation into hyphae and spores in halophilic archaea.Nature communications · 2023Article
- Genome Sequencing ofPathogens (Basel, Switzerland) · 2020Article
- Genomic Features ofPathogens (Basel, Switzerland) · 2020Article
- Genome sequence and transcriptomic profiles of a marine bacterium, Pseudoalteromonas agarivorans Hao 2018.Scientific data · 2019Article
- Comparative shotgun metagenomic data of the silkworm Bombyx mori gut microbiome.Scientific data · 2018Article
- Complete genome sequencing of Comamonas kerstersii 8943, a causative agent for peritonitis.Scientific data · 2018Article
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Authors and funding
8 authors.
Funding
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Abstract
Vibrio qinghaiensis sp.-Q67 (Vqin-Q67) is a freshwater luminescent bacterium that continuously emits blue-green light (485 nm). The bacterium has been widely used for detecting toxic contaminants. Here, we report the complete genome sequence of Vqin-Q67, obtained using third-generation PacBio sequencing technology. Continuous long reads were attained from three PacBio sequencing runs and reads >500 bp with a quality value of >0.75 were merged together into a single dataset. This resultant highly-contiguous de novo assembly has no genome gaps, and comprises two chromosomes with substantial genetic information, including protein-coding genes, non-coding RNA, transposon and gene islands. Our dataset can be useful as a comparative genome for evolution and speciation studies, as well as for the analysis of protein-coding gene families, the pathogenicity of different Vibrio species in fish, the evolution of non-coding RNA and transposon, and the regulation of gene expression in relation to the bioluminescence of Vqin-Q67.
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