Evidence map›Paper›PMID 29337135›Full record

ArticleEBioMedicine2018

Defining Bedaquiline Susceptibility, Resistance, Cross-Resistance and Associated Genetic Determinants: A Retrospective Cohort Study.

Nazir A Ismail, Shaheed V Omar, Lavania Joseph, Netricia Govender, Linsay Blows, Farzana Ismail, Hendrik Koornhof, Andries W Dreyer, Koné Kaniga, Norbert Ndjeka

Open access · goldAbstract read
In one paragraph

Article in EBioMedicine, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 75 papers, 6 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
75citing papers in PubMed, 6 pooled it
8.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

75 citing papers in PubMed, 6 syntheses or guidelines pooled it, 125 citations in OpenAlex.

  1. Pooled it
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  7. Treatment of Highly Drug-Resistant Pulmonary Tuberculosis.The New England journal of medicine · 2020
    Trial
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  14. Variability in intrinsic drug tolerance inAntimicrobial agents and chemotherapy · 2025
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15 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Nazir A IsmailNational Institute for Communicable Diseases, Centre for Tuberculosis, Johannesburg, South Africa; Department of Medical Microbiology, University of Pretoria, Pretoria, South Africa. Electronic address: naziri@nicd.ac.za.
Shaheed V OmarNational Institute for Communicable Diseases, Centre for Tuberculosis, Johannesburg, South Africa.
Lavania JosephNational Institute for Communicable Diseases, Centre for Tuberculosis, Johannesburg, South Africa.
Netricia GovenderNational Institute for Communicable Diseases, Centre for Tuberculosis, Johannesburg, South Africa.
Linsay BlowsNational Institute for Communicable Diseases, Centre for Tuberculosis, Johannesburg, South Africa.
Farzana IsmailNational Institute for Communicable Diseases, Centre for Tuberculosis, Johannesburg, South Africa; Department of Medical Microbiology, University of Pretoria, Pretoria, South Africa.
Hendrik KoornhofNational Institute for Communicable Diseases, Centre for Tuberculosis, Johannesburg, South Africa.
Andries W DreyerNational Institute for Communicable Diseases, Centre for Tuberculosis, Johannesburg, South Africa.
Koné KanigaJanssen Research & Development, Titusville, NJ, United States.
Norbert NdjekaNational Department of Health, Tuberculosis Control and Management Cluster, Pretoria, South Africa.
National Institute for Communicable DiseasesNational Health Laboratory Service · ZADepartment of Health · ZAJanssen (United States) · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundBedaquiline (BDQ) is a novel agent approved for use in combination treatment of multi-drug resistant tuberculosis (MDR-TB). We sought to determine BDQ epidemiological cut-off values (ECVs), define and assess interpretive criteria against putative resistance associated variants (RAVs), microbiological outcomes and cross resistance with clofazimine (CFZ).

methodsA retrospective cohort study was conducted. Minimal inhibitory concentrations (MIC) to BDQ were determined using 7H9 broth microdilution (BMD) and MGIT960. RAVs were genetically characterised using whole genome sequencing. BDQ ECVs were determined using ECOFFinder and compared with 6-month culture conversion status and CFZ MICs.

findingsA total of 391 isolates were analysed. Susceptible and intermediate categories were determined to have MICs of ≤0.125μg/ml and 0.25μg/ml using BMD and ≤1μg/ml and 2μg/ml using MGIT960 respectively. Microbiological failures occurred among BDQ exposed patients with a non-susceptible BDQ MIC, an Rv0678 mutation and ≤2 active drug classes. The Rv0678 RAVs were not the dominant mechanism of CFZ resistance and cross resistance was limited to isolates with an Rv0678 mutation.

interpretationCriteria for BDQ susceptibility are defined and will facilitate improved early detection of resistance. Cross- resistance between BDQ and CFZ is an emerging concern but in this study was primarily among those with an Rv0678 mutation.

Indexed as

Cohort StudiesDiarylquinolinesDrug Resistance, BacterialHumansLinear ModelsMicrobial Sensitivity TestsMycobacterium tuberculosisTuberculosisbedaquilineDiarylquinolinesBedaquilineClofazimineMicMutationTuberculosis

Identifiers

PMID29337135
PMCPMC5835552
OpenAlexW2783060093

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.