ArticleScientific reports2018
Genome-wide identification and characterization of SPL transcription factor family and their evolution and expression profiling analysis in cotton.
Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.
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Who cites it
30 citing papers in PubMed, 53 citations in OpenAlex.
- Multifaceted Roles of SPL9 in Plant Growth, Development, and Stress Responses: A Review.Plants (Basel, Switzerland) · 2026Review
- SQUAMOSA-Promoter Binding Protein Like 10/14 (OsSPL10/14) Regulate Salt Tolerance by Modulating Reactive Oxygen Species Homeostasis in Rice (Oryza Sativa L.).Rice (New York, N.Y.) · 2025Article
- Identification and Characterization of SQUAMOSA Promoter Binding Protein-like Transcription Factor Family Members inPlants (Basel, Switzerland) · 2025Article
- TaSPL6B, a member of the Squamosa promoter binding protein-like family, regulates shoot branching and florescence in Arabidopsis thaliana.BMC plant biology · 2024Article
- Genome-Wide Identification of the SQUAMOSA Promoter-Binding Protein-like (SPL) Transcription Factor Family in Sweet Cherry Fruit.International journal of molecular sciences · 2023Article
- Identification of Alfalfa SPL gene family and expression analysis under biotic and abiotic stresses.Scientific reports · 2023Article
- Molecular cloning and functional analysis of Chinese bayberryFrontiers in plant science · 2023Article
- Genome-wide identification and expression analysis of the SPL transcription factor family and its response to abiotic stress in Quinoa (Chenopodium quinoa).BMC genomics · 2022Article
- Genome-Wide Analysis of theInternational journal of molecular sciences · 2022Article
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- Molecular identification and functional verification of SPL9 and SPL15 of Lilium.Molecular genetics and genomics : MGG · 2022Article
- The PyPIF5-PymiR156a-PySPL9-PyMYB114/MYB10 module regulates light-induced anthocyanin biosynthesis in red pear.Molecular horticulture · 2021Article
- Genome-Wide Identification of ARF Transcription Factor Gene Family and Their Expression Analysis in Sweet Potato.International journal of molecular sciences · 2021Article
- Phylogenetic Analysis of the SQUAMOSA Promoter-Binding Protein-Like Genes in FourFrontiers in plant science · 2021Article
- Molecular Traits and Functional Analysis of the CLAVATA3/Endosperm Surrounding Region-Related Small Signaling Peptides in Three Species ofFrontiers in plant science · 2021Article
- Characterization of Squamosa-Promoter Binding Protein-Box Family Genes Reveals the Critical Role ofFrontiers in plant science · 2021Article
- Global analysis of SBP gene family in Brachypodium distachyon reveals its association with spike development.Scientific reports · 2020Article
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Authors and funding
3 authors at 2 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Plant specific transcription factors, SQUAMOSA promoter-binding protein-like (SPL), are involved in many biological processes. However, no systematical study has been reported in cotton. In this study, a total of 177 SPL genes were identified, including 29, 30, 59 and 59 SPLs in Gossypium arboreum, G. raimondii, G. barbadense, and G. hirsutum, respectively. These SPL genes were classified into eight phylogenetical groups. The gene structure, conserved motif, and clustering were highly conserved within each orthologs. Two zinc finger-like structures (Cys3His and Cys2HisCys) and NLS segments were existed in all GrSPLs. Segmental duplications play important roles in SPL family expansion, with 20 genes involved in segmental duplications and 2 in tandem duplications, and ten ortholog pairs in syntenic regions between G. raimondii and A. thaliana. Several putative cis-elements, involved in light, stresses and phytohormones response, were found in the promoter regions of GhSPLs, suggesting that plant responses to those environmental changes may be induced through targeting SPL transcription factors. RNA-seq analysis shows that SPL genes were differentially expressed in cotton; some were highly expressed during fiber initiation and early development. Comparing with other plants, SPL genes show subfunctionalization, lost and/or gain functions in cotton during long-term domestication and evolution.
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