Evidence map›Paper›PMID 29335528›Full record

ArticleNature cell biology2018

EXD2 governs germ stem cell homeostasis and lifespan by promoting mitoribosome integrity and translation.

Joana Silva, Suvi Aivio, Philip A Knobel, Laura J Bailey, Andreu Casali, Maria Vinaixa, Isabel Garcia-Cao, Étienne Coyaud, Alexis A Jourdain, Pablo Pérez-Ferreros and 9 more

Open access · greenAbstract read
PubMed Publisher
In one paragraph

Article in Nature cell biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
2.2field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 42 citations in OpenAlex.

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  13. Molecular Spatiomics by Proximity Labeling.Accounts of chemical research · 2022
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  14. Functional analysis ofJournal of medical genetics · 2022
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  16. Intimate Relations-Mitochondria and Ageing.International journal of molecular sciences · 2020
    Review
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

19 authors at 11 institutions in 6 countries.

Joana SilvaInstitute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology (BIST), Barcelona, Spain.
Suvi AivioInstitute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology (BIST), Barcelona, Spain.
Philip A KnobelInstitute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology (BIST), Barcelona, Spain.
Laura J BaileyGenome Damage and Stability Centre, School of Life Sciences, University of Sussex, Brighton, UK.
Andreu CasaliInstitute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology (BIST), Barcelona, Spain.
Maria VinaixaMetabolomics Platform, Department of Electronic Engineering (DEEEA), Universitat Rovira i Virgili, Tarragona, Spain.
Isabel Garcia-CaoInstitute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology (BIST), Barcelona, Spain.
Étienne CoyaudPrincess Margaret Cancer Centre, University Health Network, Toronto, Ontario, Canada.
Alexis A JourdainDepartment of Molecular Biology, Howard Hughes Medical Institute, Massachusetts General Hospital, Boston, MA, USA.ORCID 0000-0001-5321-6938
Pablo Pérez-FerrerosInstitute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology (BIST), Barcelona, Spain.
Ana M RojasComputational Biology and Bioinformatics Group, Institute of Biomedicine of Seville (IBIS/CSIC/US/JA), Campus Hospital Universitario Virgen del Rocio, Seville, Spain.
Albert Antolin-FontesInstitute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology (BIST), Barcelona, Spain.
Sara Samino-GenéMetabolomics Platform, Department of Electronic Engineering (DEEEA), Universitat Rovira i Virgili, Tarragona, Spain.
Brian RaughtPrincess Margaret Cancer Centre, University Health Network, Toronto, Ontario, Canada.
Acaimo González-ReyesCentro Andaluz de Biología del Desarrollo, Universidad Pablo de Olavide/CSIC/JA, Seville, Spain.
Lluís Ribas de PouplanaInstitute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology (BIST), Barcelona, Spain.
Aidan J DohertyGenome Damage and Stability Centre, School of Life Sciences, University of Sussex, Brighton, UK.
Oscar YanesMetabolomics Platform, Department of Electronic Engineering (DEEEA), Universitat Rovira i Virgili, Tarragona, Spain.ORCID 0000-0003-3695-7157
Travis H StrackerInstitute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology (BIST), Barcelona, Spain. travis.stracker@irbbarcelona.org.ORCID 0000-0002-8650-2081
Institute for Research in Biomedicine · ESCentro de Investigación Biomédica en Red Diabetes y Enfermedades Metabólicas Asociadas · ESUniversity Health Network · CAUniversity of Sussex · GBBrigham and Women's Hospital · USBroad Institute · USCentro Andaluz de Biología del Desarrollo · ESInstitució Catalana de Recerca i Estudis Avançats · ESInstituto de Biomedicina de Sevilla · ESUniversity Hospital of Zurich · CHUNSW Sydney · AU

Funding

Biotechnology and Biological Sciences Research Council BB/H019723/1
6 · The paper itself

Abstract

Mitochondria are subcellular organelles that are critical for meeting the bioenergetic and biosynthetic needs of the cell. Mitochondrial function relies on genes and RNA species encoded both in the nucleus and mitochondria, and on their coordinated translation, import and respiratory complex assembly. Here, we characterize EXD2 (exonuclease 3'-5' domain-containing 2), a nuclear-encoded gene, and show that it is targeted to the mitochondria and prevents the aberrant association of messenger RNAs with the mitochondrial ribosome. Loss of EXD2 results in defective mitochondrial translation, impaired respiration, reduced ATP production, increased reactive oxygen species and widespread metabolic abnormalities. Depletion of the Drosophila melanogaster EXD2 orthologue (CG6744) causes developmental delays and premature female germline stem cell attrition, reduced fecundity and a dramatic extension of lifespan that is reversed with an antioxidant diet. Our results define a conserved role for EXD2 in mitochondrial translation that influences development and ageing.

Indexed as

Protein BiosynthesisAnimalsCell NucleusDrosophila melanogasterDrosophila ProteinsExonucleasesGerm CellsHomeostasisLongevityMitochondriaMitochondrial ProteinsMitochondrial RibosomesReactive Oxygen SpeciesRNA, MessengerStem CellsDrosophila ProteinsEXD2 protein, DrosophilaExonucleasesMitochondrial ProteinsReactive Oxygen SpeciesRNA, Messenger

Identifiers

PMID29335528
OpenAlexW2783829661

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.