Evidence map›Paper›PMID 29335469›Full record

ArticleNature communications2018

Structural basis for chitin acquisition by marine Vibrio species.

Anuwat Aunkham, Michael Zahn, Anusha Kesireddy, Karunakar Reddy Pothula, Albert Schulte, Arnaud Baslé, Ulrich Kleinekathöfer, Wipa Suginta, Bert van den Berg

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 55 citations in OpenAlex.

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  10. Shell disease syndromes of decapod crustaceans.Environmental microbiology · 2023
    Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
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  17. Chitoporin from Serratia marcescens: recombinant expression, purification and crystallization.Acta crystallographica. Section F, Structural biology communications · 2020
    Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 3 countries.

Anuwat AunkhamBiochemistry-Electrochemistry Research Unit, Institute of Science, Suranaree University of Technology, Nakhon Ratchasima, 30000, Thailand.
Michael ZahnInstitute for Cell and Molecular Biosciences, The Medical School, Newcastle University, Newcastle upon Tyne, NE2 4HH, UK.
Anusha KesireddyDepartment of Physics & Earth Sciences, Jacobs University Bremen, 28759, Bremen, Germany.
Karunakar Reddy PothulaDepartment of Physics & Earth Sciences, Jacobs University Bremen, 28759, Bremen, Germany.
Albert SchulteSchool of Biomolecular Science and Engineering, Vidyasirimedhi Institute of Science and Technology (VISTEC), Wangchan Valley, 555 Moo 1 Payupnai, Wangchan, Rayong, 21210, Thailand.
Arnaud BasléInstitute for Cell and Molecular Biosciences, The Medical School, Newcastle University, Newcastle upon Tyne, NE2 4HH, UK.
Ulrich KleinekathöferDepartment of Physics & Earth Sciences, Jacobs University Bremen, 28759, Bremen, Germany.ORCID http://orcid.org/0000-0002-6114-7431
Wipa SugintaBiochemistry-Electrochemistry Research Unit, Institute of Science, Suranaree University of Technology, Nakhon Ratchasima, 30000, Thailand. wipa@sut.ac.th.
Bert van den BergInstitute for Cell and Molecular Biosciences, The Medical School, Newcastle University, Newcastle upon Tyne, NE2 4HH, UK. Bert.Van-Den-Berg@newcastle.ac.uk.ORCID http://orcid.org/0000-0003-1966-8804
Constructor University · DENewcastle University · GBSuranaree University of Technology · THVidyasirimedhi Institute of Science and Technology · TH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Chitin, an insoluble polymer of N-acetylglucosamine, is one of the most abundant biopolymers on Earth. By degrading chitin, chitinolytic bacteria such as Vibrio harveyi are critical for chitin recycling and maintenance of carbon and nitrogen cycles in the world's oceans. A decisive step in chitin degradation is the uptake of chito-oligosaccharides by an outer membrane protein channel named chitoporin (ChiP). Here, we report X-ray crystal structures of ChiP from V. harveyi in the presence and absence of chito-oligosaccharides. Structures without bound sugar reveal a trimeric assembly with an unprecedented closing of the transport pore by the N-terminus of a neighboring subunit. Substrate binding ejects the pore plug to open the transport channel. Together with molecular dynamics simulations, electrophysiology and in vitro transport assays our data provide an explanation for the exceptional affinity of ChiP for chito-oligosaccharides and point to an important role of the N-terminal gate in substrate transport.

Indexed as

AcetylglucosamineBacterial Outer Membrane ProteinsCarbonCarbon CycleChitinCrystallography, X-RayModels, MolecularNitrogenNitrogen CycleOceans and SeasOligosaccharidesPorinsProtein ConformationSeawaterVibrioAcetylglucosamineBacterial Outer Membrane ProteinsCarbonChitinNitrogenOligosaccharidesPorins

Identifiers

PMID29335469
PMCPMC5768706
OpenAlexW2784284715

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.