ArticleScientific reports2018
A Global View of Transcriptome Dynamics During Male Floral Bud Development in Populus tomentosa.
Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.
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Who cites it
15 citing papers in PubMed.
- Dynamic transcriptome analysis provides molecular insights into underground floral differentiation in Adonis Amurensis Regel & Radde.BMC genomic data · 2024Article
- Poplar coma morphogenesis and miRNA regulatory networks by combining ovary tissue sectioning and deep sequencing.iScience · 2023Article
- Molecular mechanisms of flowering phenology in trees.Forestry research · 2023Review
- Genome-wide analysis and molecular dissection of the SPL gene family in Fraxinus mandshurica.BMC plant biology · 2022Article
- Time-series RNA-Seq transcriptome profiling reveals novel insights about cold acclimation and de-acclimation processes in an evergreen shrub of high altitude.Scientific reports · 2022Article
- ARR17 controls dioecy inPhilosophical transactions of the Royal Society of London. Series B, Biological sciences · 2022Article
- Comprehensive Analyses of FourInternational journal of molecular sciences · 2022Article
- Functional Diversification ofFrontiers in plant science · 2022Article
- Hybrid transcriptome sequencing approach improved assembly and gene annotation in Cynara cardunculus (L.).BMC genomics · 2020Article
- EST-SNP Study ofGenes · 2020Article
- Gene expression trajectories during male and female reproductive development in balsam poplar (Populus balsamifera L.).Scientific reports · 2020Article
- Altered sucrose metabolism and plant growth in transgenic Populus tomentosa with altered sucrose synthase PtSS3.Transgenic research · 2020Article
- Comparative Transcriptome Reveals the Genes' Adaption to Herkogamy ofFrontiers in genetics · 2020Article
- Generation of a Comprehensive Transcriptome Atlas and Transcriptome Dynamics in Medicinal Cannabis.Scientific reports · 2019Article
- Constitutive Expression of an AppleInternational journal of molecular sciences · 2019Article
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Authors and funding
8 authors.
Funding
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Abstract
To obtain a comprehensive overview of the dynamic transcriptome during male floral bud development in Populus tomentosa, high-throughput RNA-seq was conducted during eight flowering-related stages. Among the 109,212 de novo assembled unigenes, 6,959 were differentially expressed during the eight stages. The overrepresented classed of genes identified by Gene Ontology (GO) enrichment included 'response to environmental stimuli' and 'plant-type spore development'. One-third of the differentially expressed genes were transcription factors (TFs). Several genes and gene families were analyzed in depth, including MADS-box TFs, Squamosa promoter binding protein-like family, receptor-like kinases, FLOWERING LOCUS T/TERMINAL-FLOWER-LIKE 1 family, key genes involved in anther and tapetum development, as well as LEAFY, WUSCHEL and CONSTANS. The results provided new insights into the roles of these and other well known gene families during the annual flowering cycle. To explore the mechanisms regulating poplar flowering, a weighted gene co-expression network was constructed using 98 floral-related genes involved in flower meristem identity and flower development. Many modules of co-expressed genes and hub genes were identified, such as APETALA1 and HUA1. This work provides many new insights on the annual flowering cycle in a perennial plant, and a major new resource for plant biology and biotechnology.
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