Evidence map›Paper›PMID 29334978›Full record

ArticleVirology journal2018

Plasma virome of cattle from forest region revealed diverse small circular ssDNA viral genomes.

Hao Wang, Shouxin Li, Asif Mahmood, Shixing Yang, Xiaochun Wang, Quan Shen, Tongling Shan, Xutao Deng, Jingjiao Li, Xiuguo Hua and 3 more

Abstract read
In one paragraph

Article in Virology journal, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 1 synthesis or guideline pooled it.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Hao WangDepartment of Microbiology, School of Medicine, Jiangsu University, Zhenjiang, Jiangsu, 212013, China.
Shouxin LiCollege of Wildlife Resources, Northeast Forestry University, Harbin, Heilongjiang, 150040, China.
Asif MahmoodDepartment of Microbiology, School of Medicine, Jiangsu University, Zhenjiang, Jiangsu, 212013, China.
Shixing YangDepartment of Microbiology, School of Medicine, Jiangsu University, Zhenjiang, Jiangsu, 212013, China.
Xiaochun WangDepartment of Microbiology, School of Medicine, Jiangsu University, Zhenjiang, Jiangsu, 212013, China.
Quan ShenDepartment of Microbiology, School of Medicine, Jiangsu University, Zhenjiang, Jiangsu, 212013, China.
Tongling ShanDepartment of Swine Infectious Disease, Shanghai Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Shanghai, 200241, China. shantongling@shvri.ac.cn.
Xutao DengBlood Systems Research Institute, Department of Laboratory Medicine, University of California San Francisco, San Francisco, CA, 94118, USA.
Jingjiao LiSchool of Agriculture and Biology, Shanghai Jiaotong University, Shanghai, 200240, China.
Xiuguo HuaSchool of Agriculture and Biology, Shanghai Jiaotong University, Shanghai, 200240, China.
Li CuiSchool of Agriculture and Biology, Shanghai Jiaotong University, Shanghai, 200240, China.
Eric DelwartBlood Systems Research Institute, Department of Laboratory Medicine, University of California San Francisco, San Francisco, CA, 94118, USA.
Wen ZhangDepartment of Microbiology, School of Medicine, Jiangsu University, Zhenjiang, Jiangsu, 212013, China. z0216wen@yahoo.com.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundFree-range cattle are common in the Northeast China area, which have close contact with farmers and may carry virus threatening to cattle and farmers.

methodsUsing viral metagenomics we analyzed the virome in plasma samples collected from 80 cattle from the forested region of Northeast China.

resultsThe virome of cattle plasma is composed of the viruses belonging to the families including Parvoviridae, Papillomaviridae, Picobirnaviridae, and divergent viral genomes showing sequence similarity to circular Rep-encoding single stranded (CRESS) DNA viruses. Five such CRESS-DNA genomes were full characterized, with Rep sequences related to circovirus and gemycircularvirus. Three bovine parvoviruses belonging to two different genera were also characterized.

conclusionThe virome in plasma samples of cattle from the forested region of Northeast China was revealed, which further characterized the diversity of viruses in cattle plasma.

Indexed as

DNA, CircularDNA, ViralGenetic VariationViral LoadAnimalsBiodiversityCattleCattle DiseasesDNA VirusesForestsGenome, ViralHigh-Throughput Nucleotide SequencingMetagenomeMetagenomicsPhylogenySequence Analysis, DNADNA, CircularDNA, ViralCattle bloodCRESS-DNA virusParvovirusVirome

Identifiers

PMID29334978
PMCPMC5769433

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.