Evidence map›Paper›PMID 29331148›Full record

ArticleMicrobial cell factories2018

Isolation of anti-extra-cellular vesicle single-domain antibodies by direct panning on vesicle-enriched fractions.

Milica Popovic, Elisa Mazzega, Barbara Toffoletto, Ario de Marco

Abstract read
In one paragraph

Article in Microbial cell factories, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed.

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  17. Advances in mesenchymal stem cell exosomes: a review.Stem cell research & therapy · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Milica PopovicFaculty of Chemistry, Department of Biochemistry, University of Belgrade, Studentski trg 12-16, 11000, Belgrade, Serbia. la_bioquimica@chem.bg.ac.rs.
Elisa MazzegaLaboratory for Environmental and Life Sciences, University of Nova Gorica, Glavni Trg 8-SI-5271, Vipava, Slovenia.
Barbara ToffolettoAzienda Sanitaria Universitaria Integrata di Udine-Istituto di Anatomia Patologica, Udine, Italy.
Ario de MarcoLaboratory for Environmental and Life Sciences, University of Nova Gorica, Glavni Trg 8-SI-5271, Vipava, Slovenia. ario.demarco@ung.si.ORCID http://orcid.org/0000-0001-7729-819X

Funding

ARRS BI-RS/16-17-014ARRS N4-0046-5100-1/2015-59
6 · The paper itself

Abstract

backgroundThe thorough understanding of the physiological and pathological processes mediated by extracellular vesicles (EVs) is challenged by purification methods which are cumbersome, not reproducible, or insufficient to yield homogeneous material. Chromatography based on both ion-exchange and immune-capture can represent an effective method to improve EV purification and successive analysis.

methodsCell culture supernatant was used as a model sample for assessing the capacity of anion-exchange chromatography to separate distinct EV fractions and to isolate nanobodies by direct panning on whole EVs to recover binders specific for the native conformation of EV-surface epitopes and suitable to develop EV immune-capture reagents.

resultsAnion-exchange chromatography of cell culture supernatant separated distinct protein-containing fractions and all of them were positive for CD9, a biomarker associated to some EVs. This suggested the existence of several EV fractions but did not help in separating EVs from other contaminants. We further isolated several nanobodies instrumental for implementing immune-affinity protocols. These were able to immobilize EVs from both cell culture supernatant and biological samples, to be used in ELISA, flow-cytometry, and immune-purification.

conclusionsHere we report the first successful isolation of anti-EV nanobodies for the use in immunoaffinity-based EV capture by panning a phage library directly on partially purified EVs. This achievement paves the way for the application of direct EV panning for the discovery of novel antibody-vesicle surface biomarker pairs and represents the preliminary requirement for the development of selective immune-capture that, in combination with anion-exchange chromatography, can simplify the systematic stratification of EV sub-populations and their individual characterization.

Indexed as

Chromatography, Ion ExchangeCulture MediaEpitopesExtracellular VesiclesHumansImmunoassayProteinsSingle-Domain AntibodiesCulture MediaEpitopesProteinsSingle-Domain AntibodiesExosomesExtracellular vesiclesMonolith chromatographyNanobodiesPanning strategy

Identifiers

PMID29331148
PMCPMC5766977

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.