Evidence map›Paper›PMID 29330883›Full record

ArticleHuman mutation2018

Genotype-phenotype correlations in individuals with pathogenic RERE variants.

Valerie K Jordan, Brieana Fregeau, Xiaoyan Ge, Jessica Giordano, Ronald J Wapner, Tugce B Balci, Melissa T Carter, John A Bernat, Amanda N Moccia, Anshika Srivastava and 20 more

Erratum issued Registry-linked trialOpen access · greenAbstract readCase Reports
In one paragraph

Article in Human mutation, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. It is linked to trial NCT02450851 (Clinical and Genetic Evaluation of Patients With Undiagnosed Disorders Through the Undiagnosed Diseases Network), which is not on this map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT02450851 recruitingnot on this map

Clinical and Genetic Evaluation of Patients With Undiagnosed Disorders Through the Undiagnosed Diseases Network

TypeobservationalSponsorNational Human Genome Research Institute (NHGRI)Ran2015 to 2028Enrolled20,000ConditionsGenetic Disease
3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 54 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

30 authors at 12 institutions in 3 countries.

Valerie K JordanDepartment of Molecular Physiology and Biophysics, Baylor College of Medicine, Houston, Texas.
Brieana FregeauDepartment of Neurology, University of California, San Francisco, San Francisco, California.
Xiaoyan GeDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas.
Jessica GiordanoInstitute of Genomic Medicine and Department of OB/GYN, Columbia University Medical Center, New York, New York.
Ronald J WapnerInstitute of Genomic Medicine and Department of OB/GYN, Columbia University Medical Center, New York, New York.
Tugce B BalciDepartment of Genetics, Children's Hospital of Eastern Ontario, Ottawa, ON, Canada.
Melissa T CarterDepartment of Genetics, Children's Hospital of Eastern Ontario, Ottawa, ON, Canada.
John A BernatStead Family Department of Pediatrics, The University of Iowa, Iowa City, Iowa.
Amanda N MocciaDepartment of Human Genetics, University of Michigan Medical School, Ann Arbor, Michigan.
Anshika SrivastavaDepartment of Human Genetics, University of Michigan Medical School, Ann Arbor, Michigan.
Donna M MartinDepartment of Human Genetics, University of Michigan Medical School, Ann Arbor, Michigan.
Stephanie L BielasDepartment of Human Genetics, University of Michigan Medical School, Ann Arbor, Michigan.
John PappasNew York University School of Medicine, New York, New York.
Melissa D SvobodaDepartment of Pediatrics, Children's Hospital of San Antonio/Baylor College of Medicine, San Antonio, Texas.
Marlène RioLaboratory of Developmental Brain Disorders, INSERM UMR 1163, Paris, France.
Nathalie BoddaertLaboratory of Developmental Brain Disorders, INSERM UMR 1163, Paris, France.
Vincent CantagrelLaboratory of Developmental Brain Disorders, INSERM UMR 1163, Paris, France.
Andrea M LewisDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas.
Fernando ScagliaDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas.
Undiagnosed Diseases Network
Jennefer N KohlerStanford University School of Medicine, Stanford, California.
Jonathan A BernsteinStanford University School of Medicine, Stanford, California.
Annika M DriesStanford University School of Medicine, Stanford, California.
Jill A RosenfeldDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas.
Colette DeFilippoStanford Children's Health/Lucile Packard Children's Hospital Stanford, Palo Alto, California.
Willa ThorsonUniversity of Miami, Miller School of Medicine, Miami, Florida.
Yaping YangDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas.
Elliott H SherrDepartment of Neurology, University of California, San Francisco, San Francisco, California.
Weimin BiDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas.
Daryl A ScottDepartment of Molecular Physiology and Biophysics, Baylor College of Medicine, Houston, Texas.ORCID 0000-0003-1460-5169
Baylor College of Medicine · USUniversity of Michigan · USStanford University · USUniversity of California, San Francisco · USChildren's Hospital of Eastern Ontario · CAColumbia University Irving Medical Center · USInserm · FRLucile Packard Children's Hospital · USHôpital Necker-Enfants Malades · FRNew York University · USUniversity of Iowa · USUniversity of Miami · US

Funding

PREDOCTORAL TRAINING IN GENETICST32GM007544 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MORAN, JOHN V. · 1985 to 2022
$11.3M
De novo copy number variation and gene discovery in human brain malformationsR01NS058721 · NINDS · UNIVERSITY OF CHICAGO · PI ARGILLI, EMANUELA · 2008 to 2025
$10.9M
Clinical Sequencing Core Facility for the Undiagnosed Diseases Network (UDN)U01HG007942 · NHGRI · BAYLOR COLLEGE OF MEDICINE · PI ENG, CHRISTINE · 2014 to 2021
$10.2M
Stanford Center for Undiagnosed DiseasesU01HG007708 · NHGRI · STANFORD UNIVERSITY · PI ASHLEY, EUAN A, BERNSTEIN, JONATHAN ADAM · 2014 to 2018
$8.0M
Developmental Mechanisms of the Chromodomain Gene Chd7R01DC009410 · NIDCD · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MARTIN, DONNA M. · 2009 to 2018
$3.7M
Exploration of Connexin26 Genotypes, Phenotypes, and Gene ReplacementR01DC014456 · NIDCD · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MARTIN, DONNA M., RAPHAEL, YEHOASH · 2016 to 2020
$2.5M
NHGRI NIH HHS U01 HG007708NHGRI NIH HHS U01 HG007942NIDCD NIH HHS R01 DC009410NIDCD NIH HHS R01 DC014456NIGMS NIH HHS T32 GM007544NINDS NIH HHS R01 NS058721
6 · The paper itself

Abstract

Heterozygous variants in the arginine-glutamic acid dipeptide repeats gene (RERE) have been shown to cause neurodevelopmental disorder with or without anomalies of the brain, eye, or heart (NEDBEH). Here, we report nine individuals with NEDBEH who carry partial deletions or deleterious sequence variants in RERE. These variants were found to be de novo in all cases in which parental samples were available. An analysis of data from individuals with NEDBEH suggests that point mutations affecting the Atrophin-1 domain of RERE are associated with an increased risk of structural eye defects, congenital heart defects, renal anomalies, and sensorineural hearing loss when compared with loss-of-function variants that are likely to lead to haploinsufficiency. A high percentage of RERE pathogenic variants affect a histidine-rich region in the Atrophin-1 domain. We have also identified a recurrent two-amino-acid duplication in this region that is associated with the development of a CHARGE syndrome-like phenotype. We conclude that mutations affecting RERE result in a spectrum of clinical phenotypes. Genotype-phenotype correlations exist and can be used to guide medical decision making. Consideration should also be given to screening for RERE variants in individuals who fulfill diagnostic criteria for CHARGE syndrome but do not carry pathogenic variants in CHD7.

Indexed as

Genetic Association StudiesAdolescentCarrier ProteinsChild, PreschoolFatal OutcomeFemaleHumansInfantMaleMutationYoung AdultCarrier ProteinsRERE protein, human1p36 deletion syndromeCHARGE syndromeCHD7genotype-phenotype correlationsNEDBEHRERE

Identifiers

PMID29330883
PMCPMC5903952
OpenAlexW2783930882

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.