Evidence map›Paper›PMID 29330702›Full record

ArticlePhotosynthesis research2018

pTAC10, an S1-domain-containing component of the transcriptionally active chromosome complex, is essential for plastid gene expression in Arabidopsis thaliana and is phosphorylated by chloroplast-targeted casein kinase II.

Qing-Bo Yu, Tuan-Tuan Zhao, Lin-Shan Ye, Ling Cheng, Ying-Qian Wu, Chao Huang, Zhong-Nan Yang

Abstract read
PubMed Publisher
In one paragraph

Article in Photosynthesis research, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Fine mapping and molecular marker development of the Fs gene controlling fruit spines in spinach (Spinacia oleracea L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2021
    Article
  7. Plastid Gene Transcription: An Update on Promoters and RNA Polymerases.Methods in molecular biology (Clifton, N.J.) · 2021
    Article
  8. Article
  9. Review
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Qing-Bo YuCollege of Life and Environmental Sciences, Shanghai Normal University, Shanghai, 200234, China.
Tuan-Tuan ZhaoCollege of Life and Environmental Sciences, Shanghai Normal University, Shanghai, 200234, China.
Lin-Shan YeCollege of Life and Environmental Sciences, Shanghai Normal University, Shanghai, 200234, China.
Ling ChengCollege of Life and Environmental Sciences, Shanghai Normal University, Shanghai, 200234, China.
Ying-Qian WuCollege of Life and Environmental Sciences, Shanghai Normal University, Shanghai, 200234, China.
Chao HuangCollege of Life and Environmental Sciences, Shanghai Normal University, Shanghai, 200234, China.
Zhong-Nan YangCollege of Life and Environmental Sciences, Shanghai Normal University, Shanghai, 200234, China. znyang@shnu.edu.cn.ORCID http://orcid.org/0000-0002-5918-2385

Funding

National Natural Science Foundation of China 31570232National Science Foundation of China 31370271
6 · The paper itself

Abstract

In higher plant chloroplasts, the plastid-encoded RNA polymerase (PEP) consists of four catalytic subunits and numerous nuclear-encoded accessory proteins, including pTAC10, an S1-domain-containing protein. In this study, pTAC10 knockout lines were characterized. Two ptac10 mutants had an albino phenotype and severely impaired chloroplast development. The pTAC10 genomic sequence fused to a four-tandem MYC tag driven by its own promoter functionally complemented the ptac10-1 mutant phenotype. pTAC10 was present in both the chloroplast stroma and thylakoids. Two-dimensional blue native polyacrylamide gel electrophoresis (BN-PAGE), and immunoblotting assays showed that pTAC10:MYC co-migrates with one of the PEP core subunits, RpoB. A comprehensive investigation of the plastid gene expression profiles by quantitative RT-PCR revealed that, compared with wild-type plants, the abundance of PEP-dependent plastid transcripts is severely decreased in the ptac10-1 mutant, while the amount of plastid transcripts exclusively transcribed by NEP either barely changes or even increases. RNA blot analysis confirmed that PEP-dependent chloroplast transcripts, including psaB, psbA and rbcL, substantially decrease in the ptac10-1 mutant. Immunoblotting showed reduced accumulation of most chloroplast proteins in the ptac10 mutants. These data indicate the essential role of pTAC10 in plastid gene expression and plastid development. pTAC10 interacts with chloroplast-targeted casein kinase 2 (cpCK2) in vitro and in vivo and can be phosphorylated by Arabidopsis cpCK2 in vitro at sites Ser95, Ser396 and Ser434. RNA-EMSA assays showed that pTAC10 is able to bind to the psbA, atpE and accD transcripts, suggesting a non-specific RNA-binding activity of pTAC10. The RNA affinity of pTAC10 was enhanced by phosphorylation and decreased by the amino acid substitution Ser434-Ala of pTAC10. These data show that pTAC10 is essential for plastid gene expression in Arabidopsis and that it can be phosphorylated by cpCK2.

Indexed as

Amino Acid SubstitutionArabidopsisArabidopsis ProteinsCasein Kinase IIChloroplast ProteinsChloroplastsGene Expression Regulation, PlantMutationPhosphorylationPhotosystem II Protein ComplexPlants, Genetically ModifiedPlastidsProtein DomainsRNA, PlantThylakoidsArabidopsis ProteinsCasein Kinase IIChloroplast ProteinsPhotosystem II Protein ComplexpsbA protein, ArabidopsispTAC10 protein, ArabidopsisRNA, PlantArabidopsisCK2PhosphorylationPlastid gene expressionpTAC10RNA-binding

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.