Evidence map›Paper›PMID 29330665›Full record

ArticleJournal of industrial microbiology & biotechnology2018

A synthetic pathway for the production of 2-hydroxyisovaleric acid in Escherichia coli.

Seokjung Cheong, James M Clomburg, Ramon Gonzalez

Abstract read
PubMed Publisher
In one paragraph

Article in Journal of industrial microbiology & biotechnology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.4field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 9 citations in OpenAlex.

  1. EngineeringBiodesign research · 2025
    Article
  2. The isoprenoid alcohol pathway, a synthetic route for isoprenoid biosynthesis.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Seokjung CheongDepartment of Chemical and Biomolecular Engineering, Rice University, 6100 Main Street, MS-667, Houston, TX, 77005, USA.
James M ClomburgDepartment of Chemical and Biomolecular Engineering, Rice University, 6100 Main Street, MS-667, Houston, TX, 77005, USA.
Ramon GonzalezDepartment of Chemical and Biomolecular Engineering, Rice University, 6100 Main Street, MS-667, Houston, TX, 77005, USA. Ramon.Gonzalez@rice.edu.ORCID http://orcid.org/0000-0003-4797-6580
Rice University · US

Funding

Division of Chemical, Bioengineering, Environmental, and Transport Systems CBET-1067565Division of Chemical, Bioengineering, Environmental, and Transport Systems CBET-1134541Division of Chemical, Bioengineering, Environmental, and Transport Systems EEC-0813570
6 · The paper itself

Abstract

Synthetic biology, encompassing the design and construction of novel artificial biological pathways and organisms and the redesign of existing natural biological systems, is rapidly expanding the number of applications for which biological systems can play an integral role. In the context of chemical production, the combination of synthetic biology and metabolic engineering approaches continues to unlock the ability to biologically produce novel and complex molecules from a variety of feedstocks. Here, we utilize a synthetic approach to design and build a pathway to produce 2-hydroxyisovaleric acid in Escherichia coli and demonstrate how pathway design can be supplemented with metabolic engineering approaches to improve pathway performance from various carbon sources. Drawing inspiration from the native pathway for the synthesis of the 5-carbon amino acid L-valine, we exploit the decarboxylative condensation of two molecules of pyruvate, with subsequent reduction and dehydration reactions enabling the synthesis of 2-hydroxyisovaleric acid. Key to our approach was the utilization of an acetolactate synthase which minimized kinetic and regulatory constraints to ensure sufficient flux entering the pathway. Critical host modifications enabling maximum product synthesis from either glycerol or glucose were then examined, with the varying degree of reduction of these carbons sources playing a major role in the required host background. Through these engineering efforts, the designed pathway produced 6.2 g/L 2-hydroxyisovaleric acid from glycerol at 58% of maximum theoretical yield and 7.8 g/L 2-hydroxyisovaleric acid from glucose at 73% of maximum theoretical yield. These results demonstrate how the combination of synthetic biology and metabolic engineering approaches can facilitate bio-based chemical production.

Indexed as

Synthetic BiologyEscherichia coliEscherichia coli ProteinsGlycerolKineticsMetabolic EngineeringPyruvic AcidValerates2-hydroxyisovaleric acidEscherichia coli ProteinsGlycerolPyruvic AcidValerates2-Hydroxyisovaleric acidFuels and chemicalsMetabolic engineeringSynthetic biology

Identifiers

PMID29330665
OpenAlexW2782666770

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.