ArticleThe ISME journal2018
Carbon limitation drives GC content evolution of a marine bacterium in an individual-based genome-scale model.
Article in The ISME journal, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
29 citing papers in PubMed.
- The Anna Karenina principle in the assembly of plant microbiome under pathogen stress.NPJ biofilms and microbiomes · 2026Article
- Genome-resolved metagenomics uncovers diversity and functional landscapes of the gastrointestinal epithelium-associated microbiome in cattle.Genome biology · 2026Article
- Evolutionary history and association with seaweeds shape the genomes and metabolisms of marine bacteria.mSphere · 2025Article
- Diversity and distribution of a prevalent Microviridae group across the global oceans.Communications biology · 2024Article
- Niche differentiation in microbial communities with stable genomic traits over time in engineered systems.The ISME journal · 2024Article
- Genome reduction occurred in early Prochlorococcus with an unusually low effective population size.The ISME journal · 2024Article
- Internal carbon recycling by heterotrophic prokaryotes compensates for mismatches between phytoplankton production and heterotrophic consumption.The ISME journal · 2024Article
- Metagenome-assembled genomes reveal greatly expanded taxonomic and functional diversification of the abundant marine Roseobacter RCA cluster.Microbiome · 2023Article
- Genome-Wide Identification and Analysis ofPlants (Basel, Switzerland) · 2023Article
- Marine viruses disperse bidirectionally along the natural water cycle.Nature communications · 2023Article
- Genome content predicts the carbon catabolic preferences of heterotrophic bacteria.Nature microbiology · 2023Article
- Comparative genomic assessment of members of genus Tenacibaculum: an exploratory study.Molecular genetics and genomics : MGG · 2023Review
- Genomic Legacies of Ancient Adaptation Illuminate GC-Content Evolution in Bacteria.Microbiology spectrum · 2023Article
- Everything Is Everywhere: Physiological Responses of the Mediterranean Sea and Eastern Pacific Ocean Epiphyte Cobetia Sp. to Varying Nutrient Concentration.Microbial ecology · 2022Article
- Prochlorococcus have low global mutation rate and small effective population size.Nature ecology & evolution · 2022Article
- Trait-trait relationships and tradeoffs vary with genome size in prokaryotes.Frontiers in microbiology · 2022Article
- Comprehensive deciphering prophages in genusFrontiers in microbiology · 2022Article
- Little Evidence the Standard Genetic Code Is Optimized for Resource Conservation.Molecular biology and evolution · 2021Article
- Comprehensive Scanning of Prophages inmSystems · 2021Article
- Heterozygous, Polyploid, Giant Bacterium, Achromatium, Possesses an Identical Functional Inventory Worldwide across Drastically Different Ecosystems.Molecular biology and evolution · 2021Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
3 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
An important unanswered question in evolutionary genomics is the source of considerable variation of genomic base composition (GC content) even among organisms that share one habitat. Evolution toward GC-poor genomes has been considered a major adaptive pathway in the oligotrophic ocean, but GC-rich bacteria are also prevalent and highly successful in this environment. We quantify the contribution of multiple factors to the change of genomic GC content of Ruegeria pomeroyi DSS-3, a representative and GC-rich member in the globally abundant Roseobacter clade, using an agent-based model. The model simulates 2 × 10
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.