Evidence map›Paper›PMID 29330529›Full record

ArticleScientific reports2018

The interaction network of the YidC insertase with the SecYEG translocon, SRP and the SRP receptor FtsY.

Narcis-Adrian Petriman, Benjamin Jauß, Antonia Hufnagel, Lisa Franz, Ilie Sachelaru, Friedel Drepper, Bettina Warscheid, Hans-Georg Koch

Abstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. The versatile role of YidC in membrane protein biosynthesis and quality control.Biochimica et biophysica acta. Molecular cell research · 2025
    Review
  6. Review
  7. Article
  8. YidC fromBiomolecules · 2023
    Article
  9. Article
  10. The Biogenesis of Multipass Membrane Proteins.Cold Spring Harbor perspectives in biology · 2023
    Review
  11. Article
  12. Article
  13. Article
  14. Multi-Omics ofProteomes · 2022
    Article
  15. Article
  16. The mechanisms of integral membrane protein biogenesis.Nature reviews. Molecular cell biology · 2022
    Review
  17. Review
  18. Cotranslational Biogenesis of Membrane Proteins in Bacteria.Frontiers in molecular biosciences · 2022
    Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Narcis-Adrian PetrimanInstitute of Biochemistry and Molecular Biology, ZBMZ, Faculty of Medicine, Albert-Ludwigs-University Freiburg, 79104, Freiburg, Germany.
Benjamin JaußInstitute of Biochemistry and Molecular Biology, ZBMZ, Faculty of Medicine, Albert-Ludwigs-University Freiburg, 79104, Freiburg, Germany.
Antonia HufnagelInstitute of Biochemistry and Molecular Biology, ZBMZ, Faculty of Medicine, Albert-Ludwigs-University Freiburg, 79104, Freiburg, Germany.
Lisa FranzInstitute of Biochemistry and Molecular Biology, ZBMZ, Faculty of Medicine, Albert-Ludwigs-University Freiburg, 79104, Freiburg, Germany.
Ilie SachelaruInstitute of Biochemistry and Molecular Biology, ZBMZ, Faculty of Medicine, Albert-Ludwigs-University Freiburg, 79104, Freiburg, Germany.
Friedel DrepperInstitute of Biology II, Biochemistry - Functional Proteomics, Faculty of Biology, Albert-Ludwigs-University Freiburg, 79104, Freiburg, Germany.ORCID http://orcid.org/0000-0002-2043-5795
Bettina WarscheidInstitute of Biology II, Biochemistry - Functional Proteomics, Faculty of Biology, Albert-Ludwigs-University Freiburg, 79104, Freiburg, Germany.
Hans-Georg KochInstitute of Biochemistry and Molecular Biology, ZBMZ, Faculty of Medicine, Albert-Ludwigs-University Freiburg, 79104, Freiburg, Germany. Hans-Georg.Koch@biochemie.uni-freiburg.de.ORCID http://orcid.org/0000-0001-5913-0334

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

YidC/Oxa1/Alb3 are essential proteins that operate independently or cooperatively with the Sec machinery during membrane protein insertion in bacteria, archaea and eukaryotic organelles. Although the interaction between the bacterial SecYEG translocon and YidC has been observed in multiple studies, it is still unknown which domains of YidC are in contact with the SecYEG translocon. By in vivo and in vitro site-directed and para-formaldehyde cross-linking we identified the auxiliary transmembrane domain 1 of E. coli YidC as a major contact site for SecY and SecG. Additional SecY contacts were observed for the tightly packed globular domain and the C1 loop of YidC, which reveals that the hydrophilic cavity of YidC faces the lateral gate of SecY. Surprisingly, YidC-SecYEG contacts were only observed when YidC and SecYEG were present at about stoichiometric concentrations, suggesting that the YidC-SecYEG contact in vivo is either very transient or only observed for a very small SecYEG sub-population. This is different for the YidC-SRP and YidC-FtsY interaction, which involves the C1 loop of YidC and is efficiently observed even at sub-stoichiometric concentrations of SRP/FtsY. In summary, our data provide a first detailed view on how YidC interacts with the SecYEG translocon and the SRP-targeting machinery.

Indexed as

Bacterial ProteinsBinding SitesEscherichia coliEscherichia coli ProteinsMembrane Transport ProteinsModels, MolecularProtein BindingProtein ConformationReceptors, Cytoplasmic and NuclearSEC Translocation ChannelsBacterial ProteinsEscherichia coli ProteinsFtsY protein, BacteriaMembrane Transport ProteinsReceptors, Cytoplasmic and NuclearSecE protein, E coliSecG protein, E coliSEC Translocation ChannelsSecY protein, E coliYIDC protein, E coli

Identifiers

PMID29330529
PMCPMC5766551

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.