Evidence map›Paper›PMID 29330501›Full record

ArticleScientific reports2018

Novel endogenous simian retroviral integrations in Vero cells: implications for quality control of a human vaccine cell substrate.

Chisato Sakuma, Tsuyoshi Sekizuka, Makoto Kuroda, Fumio Kasai, Kyoko Saito, Masaki Ikeda, Toshiyuki Yamaji, Naoki Osada, Kentaro Hanada

Open access · goldAbstract readComparative Study
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 27 citations in OpenAlex.

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  11. Cell culture bioprocessing - the road taken and the path forward.Current opinion in chemical engineering · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Chisato SakumaDepartment of Biochemistry & Cell Biology, National Institute of Infectious Diseases, Tokyo, 162-8640, Japan.
Tsuyoshi SekizukaPathogen Genomics Center, National Institute of Infectious Diseases, Tokyo, 162-8640, Japan.
Makoto KurodaPathogen Genomics Center, National Institute of Infectious Diseases, Tokyo, 162-8640, Japan.
Fumio KasaiLaboratory of Cell Cultures, National Institutes of Biomedical Innovation, Health and Nutrition, Ibaraki, Osaka, 567-0085, Japan.
Kyoko SaitoDepartment of Biochemistry & Cell Biology, National Institute of Infectious Diseases, Tokyo, 162-8640, Japan.
Masaki IkedaGraduate School of Information Science and Technology, Hokkaido University, Sapporo, 060-0814, Japan.
Toshiyuki YamajiDepartment of Biochemistry & Cell Biology, National Institute of Infectious Diseases, Tokyo, 162-8640, Japan.
Naoki OsadaGraduate School of Information Science and Technology, Hokkaido University, Sapporo, 060-0814, Japan. nosada@ist.hokudai.ac.jp.
Kentaro HanadaDepartment of Biochemistry & Cell Biology, National Institute of Infectious Diseases, Tokyo, 162-8640, Japan. hanak@nih.go.jp.ORCID http://orcid.org/0000-0003-1383-2781
National Institute of Infectious Diseases · JPHokkaido University · JPNational Institute of Biomedical Innovation, Health and Nutrition · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

African green monkey (AGM)-derived Vero cells have been utilized to produce various human vaccines. The Vero cell genome harbors a variety of simian endogenous type D retrovirus (SERV) sequences. In this study, a transcriptome analysis showed that DNA hypomethylation released the epigenetic repression of SERVs in Vero cells. Moreover, comparative genomic analysis of three Vero cell sublines and an AGM reference revealed that the genomes of the sublines have ~80 SERV integrations. Among them, ~60 integrations are present within all three cell sublines and absent from the reference sequence. At least several of these integrations consist of complete SERV proviruses. These results strongly suggest that SERVs integrated in the genome of Vero cells did not retrotranspose after the establishment of the cell lineage as far as cells were maintained under standard culture and passage conditions, providing a scientific basis for controlling the quality of pharmaceutical cell substrates and their derived biologics.

Indexed as

DNA MethylationAnimalsChlorocebus aethiopsEndogenous RetrovirusesEpigenesis, GeneticGene Expression ProfilingHumansQuality ControlRetroviruses, SimianSequence Analysis, DNAVaccinesVero CellsVirus IntegrationVaccines

Identifiers

PMID29330501
PMCPMC5766633
OpenAlexW2783849336

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.