ArticleScientific reports2018
Developing genome-wide SNPs and constructing an ultrahigh-density linkage map in oil palm.
Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.
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Who cites it
15 citing papers in PubMed.
- High-Density Genetic Map Construction and Quantitative Trait Locus Analysis of Fruit- and Oil-Related Traits inInternational journal of molecular sciences · 2024Article
- Multi-Omics Approaches in Oil Palm Research: A Comprehensive Review of Metabolomics, Proteomics, and Transcriptomics Based on Low-Temperature Stress.International journal of molecular sciences · 2024Review
- Combination of GWAS and FMolecular genetics and genomics : MGG · 2023Article
- Genome properties of key oil palm (Elaeis guineensis Jacq.) breeding populations.Journal of applied genetics · 2022Article
- Compatibility between snails and schistosomes: insights from new genetic resources, comparative genomics, and genetic mapping.Communications biology · 2022Article
- Oil Palm Breeding in the Modern Era: Challenges and Opportunities.Plants (Basel, Switzerland) · 2022Review
- Genomic Basis of Striking Fin Shapes and Colors in the Fighting Fish.Molecular biology and evolution · 2021Article
- Molecular approaches for improving oil palm for oil.Molecular breeding : new strategies in plant improvement · 2021Review
- Article
- Linkage-based genome assembly improvement of oil palm (Elaeis guineensis).Scientific reports · 2019Article
- Construction of a high-density linkage map and QTL mapping for important agronomic traits in Stylosanthes guianensis (Aubl.) Sw.Scientific reports · 2019Article
- Experimental validation of in silico predicted RAD locus frequencies using genomic resources and short read data from a model marine mammal.BMC genomics · 2019Article
- Genetic Mapping of the Incompatibility Locus in Olive and Development of a Linked Sequence-Tagged Site Marker.Frontiers in plant science · 2019Article
- LD-annot: A Bioinformatics Tool to Automatically Provide Candidate SNPs With Annotations for Genetically Linked Genes.Frontiers in genetics · 2019Article
- Artificially designed hybrids facilitate efficient generation of high-resolution linkage maps.Scientific reports · 2018Article
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Authors and funding
11 authors.
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Abstract
Oil palm (Elaeis guineensis Jacq.) is the leading oil-producing crops and the most important edible oil resource worldwide. DNA markers and genetic linkage maps are essential resources for marker-assisted selection to accelerate genetic improvement. We conducted RAD-seq on an Illumina NextSeq500 to discover genome-wide SNPs, and used the SNPs to construct a linkage map for an oil palm (Tenera) population derived from a cross between a Deli Dura and an AVROS Pisifera. The RAD-seq produced 1,076 million single-end reads across the breeding population containing 155 trees. Mining this dataset detected 510,251 loci. After filtering out loci with low accuracy and more than 20% missing data, 11,394 SNPs were retained. Using these SNPs, in combination with 188 anchor SNPs and 123 microsatellites, we constructed a linkage map containing 10,023 markers covering 16 chromosomes. The map length is 2,938.2 cM with an average marker space of 0.29 cM. The large number of SNPs will supply ample choices of DNA markers in analysing the genetic diversity, population structure and evolution of oil palm. This high-density linkage map will contribute to mapping quantitative trait loci (QTL) for important traits, thus accelerating oil palm genetic improvement.
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