ArticleScientific reports2018
Discovery of microRNA-target modules of African rice (Oryza glaberrima) under salinity stress.
Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.
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Who cites it
23 citing papers in PubMed, 53 citations in OpenAlex.
- Rice and shine: a review of miRNA-mediated responses to abiotic stress inFrontiers in plant science · 2026Review
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- Elucidating the molecular basis of salt tolerance in potatoes through miRNA expression and phenotypic analysis.Scientific reports · 2025Article
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- MiRNA fine tuning for crop improvement: using advance computational models and biotechnological tools.Molecular biology reports · 2022Review
- Genome-wide identification and functional prediction of salt- stress related long non-coding RNAs (lncRNAs) in chickpea (Physiology and molecular biology of plants : an international journal of functional plant biology · 2021Article
- miRNAs play critical roles in response to abiotic stress by modulating cross-talk of phytohormone signaling.Plant cell reports · 2021Review
- Toward Integrated Multi-Omics Intervention: Rice Trait Improvement and Stress Management.Frontiers in plant science · 2021Review
- Identification and Functional Characterization of Plant MiRNA Under Salt Stress Shed Light on Salinity Resistance Improvement Through MiRNA Manipulation in Crops.Frontiers in plant science · 2021Review
- Genome-wide analysis of PHD finger gene family and identification of potential miRNA and their PHD finger gene specific targets inNon-coding RNA research · 2020Article
- In silico identification and validation of miRNA and their DIR specific targets inNon-coding RNA research · 2020Article
- A Comprehensive Analysis of MicroRNAs Expressed in Susceptible and Resistant Rice Cultivars duringInternational journal of molecular sciences · 2020Article
- A genome-wide identification, characterization and functional analysis of salt-related long non-coding RNAs in non-model plant Pistacia vera L. using transcriptome high throughput sequencing.Scientific reports · 2020Article
- High-throughput deep sequencing reveals the important role that microRNAs play in the salt response in sweet potato (Ipomoea batatas L.).BMC genomics · 2020Article
- Genome-wide identification and characterization of microRNAs by small RNA sequencing for low nitrogen stress in potato.PloS one · 2020Article
- Comparative Transcriptome Analysis Reveals New lncRNAs Responding to Salt Stress in Sweet Sorghum.Frontiers in bioengineering and biotechnology · 2020Article
- Article
- Advances in Molecular Genetics and Genomics of African Rice (Plants (Basel, Switzerland) · 2019Review
- Review
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Authors and funding
4 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Oryza glaberrima is the second edible rice in the genus Oryza. It is grown in the African countries. miRNAs are regulatory molecules that are involved in every domains of gene expression including salinity stress response. Although several miRNAs have been reported from various species of Oryza, yet none of them are from this species. Salt treated (200 mM NaCl for 48 h) and control smallRNA libraries of RAM-100, a salt tolerant genotype, each with 2 replications generated 150 conserve and 348 novel miRNAs. We also used smallRNAseq data of NCBI of O. glaberrima to discover additional 246 known miRNAs. Totally, 29 known and 32 novel miRNAs were differentially regulated under salinity stress. Gene ontology and KEGG analysis indicated several targets were involved in vital biological pathways of salinity stress tolerance. Expression of selected miRNAs as indicated by Illumina data were found to be coherent with real time-PCR analysis. However, target gene expression was inversely correlated with their corresponding miRNAs. Finally based upon present results as well as existing knowledge of literature, we proposed the miRNA-target modules that were induced by salinity stress. Therefore, the present findings provide valuable information about miRNA-target networks in salinity adaption of O. glaberrima.
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