Evidence map›Paper›PMID 29329601›Full record

ArticleBMC research notes2018

Nicotiana glauca whole-genome investigation for cT-DNA study.

Galina Khafizova, Pavel Dobrynin, Dmitrii Polev, Tatiana Matveeva

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in BMC research notes, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Plants (Basel, Switzerland) · 2023
    Article
  2. Parental origin of the allotetraploid tobacco Nicotiana benthamiana.The Plant journal : for cell and molecular biology · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Galina KhafizovaDepartment of Genetics and Biotechnology, Saint Petersburg State University, Universitetskaya emb. 7/9, Saint Petersburg, 199034, Russia. galina.khafizova@gmail.com.
Pavel DobryninTheodosius Dobzhansky Center for Genome Bioinformatics, Saint Petersburg State University, 41A Sredniy Ave, Saint Petersburg, 199004, Russia.
Dmitrii PolevResearch Park, Saint Petersburg State University, 17 Botanicheskaya St, Peterhof, Saint Petersburg, 198504, Russia.
Tatiana MatveevaDepartment of Genetics and Biotechnology, Saint Petersburg State University, Universitetskaya emb. 7/9, Saint Petersburg, 199034, Russia.

Funding

Russian Science Foundation 16-16-10010Saint Petersburg State University 1.52.1647.2016
6 · The paper itself

Abstract

objectiveNicotiana glauca (tree tobacco) is a naturally transgenic plant, containing sequences acquired from Agrobacterium rhizogenes by horizontal gene transfer. Besides, N. glauca contains a wide profile of alkaloids of medical interest. DATA DESCRIPTION: We report a high-depth sequencing and de novo assembly of N. glauca full genome and analysis of genome elements with bacterial origin. The draft genome assembly is 3.2 Gb, with N50 size of 31.1 kbp. Comparative analysis confirmed the presence of single, previously described gT insertion. No evidence was acquired to support idea of multiple T-DNA insertions in the N. glauca genome. Our data is the first comprehensive de novo assembly of tree tobacco and provide valuable information for researches in pharmacological and in phylogenetic fields.

Indexed as

DNA, BacterialGene Transfer, HorizontalGenome, PlantHigh-Throughput Nucleotide SequencingNicotianaSequence Analysis, DNADNA, BacterialT-DNACellular T-DNAGenome assemblyNicotiana glaucaWhole genome sequencing

Identifiers

PMID29329601
PMCPMC5766994

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.