Evidence map›Paper›PMID 29329394›Full record

ArticleGigaScience2018

Analysis of the Aedes albopictus C6/36 genome provides insight into cell line utility for viral propagation.

Jason R Miller, Sergey Koren, Kari A Dilley, Vinita Puri, David M Brown, Derek M Harkins, Françoise Thibaud-Nissen, Benjamin Rosen, Xiao-Guang Chen, Zhijian Tu and 9 more

Open access · goldAbstract read
In one paragraph

Article in GigaScience, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
3.5field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 79 citations in OpenAlex.

  1. Review
  2. Advancing insect research through cell line transcriptomics.In vitro cellular & developmental biology. Animal · 2026
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  6. iScience · 2024
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  10. Tracking Adaptive Pathways of Invasive Insects: Novel Insight from Genomics.International journal of molecular sciences · 2023
    Review
  11. Article
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  15. Review
  16. Article
  17. A Conserved Female-Specific Requirement for thePathogens (Basel, Switzerland) · 2022
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 7 institutions in 3 countries.

Jason R MillerJ. Craig Venter Institute, 9714 Medical Center Drive, Rockville, MD 20850, USA.
Sergey KorenGenome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, Bethesda, MD 20892, USA.
Kari A DilleyJ. Craig Venter Institute, 9714 Medical Center Drive, Rockville, MD 20850, USA.
Vinita PuriJ. Craig Venter Institute, 9714 Medical Center Drive, Rockville, MD 20850, USA.
David M BrownJ. Craig Venter Institute, 9714 Medical Center Drive, Rockville, MD 20850, USA.
Derek M HarkinsJ. Craig Venter Institute, 9714 Medical Center Drive, Rockville, MD 20850, USA.
Françoise Thibaud-NissenNCBI/NLM/NIH, 45 Center Drive, Bethesda, MD 20894, USA.
Benjamin RosenUSDA 10300 Baltimore Ave., Bldg 306 Barc-East, Beltsville, MD 20705-2350, USA.
Xiao-Guang ChenDepartment of Pathogen Biology, School of Public Health and Tropical Medicine, Southern Medical University, Guangzhou 510515, China.
Zhijian TuDepartment of Biochemistry and the Fralin Life Science Institute, Virginia Tech, Blacksburg, VA, USA.
Igor V SharakhovDepartment of Entomology and the Fralin Life Science Institute, Virginia Tech, Blacksburg, VA, USA.
Maria V SharakhovaDepartment of Entomology and the Fralin Life Science Institute, Virginia Tech, Blacksburg, VA, USA.
Robert SebraIcahn School of Medicine at Mount Sinai, New York, NY 10029, USA.
Timothy B StockwellNBACC, Fort Detrick, MD 21702, USA.
Nicholas H BergmanNBACC, Fort Detrick, MD 21702, USA.
Granger G SuttonJ. Craig Venter Institute, 9714 Medical Center Drive, Rockville, MD 20850, USA.
Adam M PhillippyGenome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, Bethesda, MD 20892, USA.
Peter M PiermariniJ. Craig Venter Institute, 9714 Medical Center Drive, Rockville, MD 20850, USA.
Reed S ShabmanJ. Craig Venter Institute, 9714 Medical Center Drive, Rockville, MD 20850, USA.
J. Craig Venter Institute · USNational Human Genome Research Institute · USVirginia Tech · USIcahn School of Medicine at Mount Sinai · USNational Center for Biotechnology Information · USNational Research Tomsk State University · RUSouthern Medical University · CN

Funding

Single-molecule sequence assembly and analysisZIAHG200398 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI PHILLIPPY, ADAM · 2016 to 2025
$15.9M
Mechanism and application of male determination in aedine mosquitoesR01AI123338 · NIAID · VIRGINIA POLYTECHNIC INST AND ST UNIV · PI TU, ZHIJIAN JAKE · 2016 to 2020
$2.9M
NIAID NIH HHS R01 AI123338
6 · The paper itself

Abstract

Background: The 50-year-old Aedes albopictus C6/36 cell line is a resource for the detection, amplification, and analysis of mosquito-borne viruses including Zika, dengue, and chikungunya. The cell line is derived from an unknown number of larvae from an unspecified strain of Aedes albopictus mosquitoes. Toward improved utility of the cell line for research in virus transmission, we present an annotated assembly of the C6/36 genome. Results: The C6/36 genome assembly has the largest contig N50 (3.3 Mbp) of any mosquito assembly, presents the sequences of both haplotypes for most of the diploid genome, reveals independent null mutations in both alleles of the Dicer locus, and indicates a male-specific genome. Gene annotation was computed with publicly available mosquito transcript sequences. Gene expression data from cell line RNA sequence identified enrichment of growth-related pathways and conspicuous deficiency in aquaporins and inward rectifier K+ channels. As a test of utility, RNA sequence data from Zika-infected cells were mapped to the C6/36 genome and transcriptome assemblies. Host subtraction reduced the data set by 89%, enabling faster characterization of nonhost reads. Conclusions: The C6/36 genome sequence and annotation should enable additional uses of the cell line to study arbovirus vector interactions and interventions aimed at restricting the spread of human disease.

Indexed as

AedesAnimalsBase SequenceCell LineGenome, InsectHumansLarvaMosquito VectorsVirus ReplicationZika VirusZika Virus Infection

Identifiers

PMID29329394
PMCPMC5869287
OpenAlexW2782871299

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.