Evidence map›Paper›PMID 29329287›Full record

ArticlePLoS neglected tropical diseases2018

Isolation and complete genome analysis of neurotropic dengue virus serotype 3 from the cerebrospinal fluid of an encephalitis patient.

Rama Dhenni, Mulya Rahma Karyanti, Nina Dwi Putri, Benediktus Yohan, Frilasita A Yudhaputri, Chairin Nisa Ma'roef, Araniy Fadhilah, Aditya Perkasa, Restuadi Restuadi, Hidayat Trimarsanto and 6 more

Abstract read
In one paragraph

Article in PLoS neglected tropical diseases, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

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  10. Pathogenic viruses: Molecular detection and characterization.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2020
    Review
  11. Article
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  14. High-throughput sequencing for the aetiologic identification of viral encephalitis, meningoencephalitis, and meningitis. A narrative review and clinical appraisal.Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases · 2019
    Review
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Rama DhenniEijkman Institute for Molecular Biology, Jakarta, Indonesia.
Mulya Rahma KaryantiDepartment of Paediatrics, Dr. Cipto Mangunkusumo National Central Hospital, Faculty of Medicine, Universitas Indonesia, Jakarta, Indonesia.
Nina Dwi PutriDepartment of Paediatrics, Dr. Cipto Mangunkusumo National Central Hospital, Faculty of Medicine, Universitas Indonesia, Jakarta, Indonesia.
Benediktus YohanEijkman Institute for Molecular Biology, Jakarta, Indonesia.
Frilasita A YudhaputriEijkman Institute for Molecular Biology, Jakarta, Indonesia.
Chairin Nisa Ma'roefEijkman Institute for Molecular Biology, Jakarta, Indonesia.
Araniy FadhilahEijkman Institute for Molecular Biology, Jakarta, Indonesia.
Aditya PerkasaEijkman Institute for Molecular Biology, Jakarta, Indonesia.
Restuadi RestuadiEijkman Institute for Molecular Biology, Jakarta, Indonesia.
Hidayat TrimarsantoEijkman Institute for Molecular Biology, Jakarta, Indonesia.
Irawan MangunatmadjaDepartment of Paediatrics, Dr. Cipto Mangunkusumo National Central Hospital, Faculty of Medicine, Universitas Indonesia, Jakarta, Indonesia.
Jeremy P LedermannDivision of Vector-Borne Diseases, Centers for Disease Control and Prevention, Fort Collins, Colorado, United States of America.
Ronald RosenbergDivision of Vector-Borne Diseases, Centers for Disease Control and Prevention, Fort Collins, Colorado, United States of America.
Ann M PowersDivision of Vector-Borne Diseases, Centers for Disease Control and Prevention, Fort Collins, Colorado, United States of America.
Khin Saw Aye MyintEijkman Institute for Molecular Biology, Jakarta, Indonesia.ORCID 0000-0002-2087-7331
R Tedjo SasmonoEijkman Institute for Molecular Biology, Jakarta, Indonesia.

Funding

NCEZID CDC HHS U18 CK000443
6 · The paper itself

Abstract

Although neurological manifestations associated with dengue viruses (DENV) infection have been reported, there is very limited information on the genetic characteristics of neurotropic DENV. Here we describe the isolation and complete genome analysis of DENV serotype 3 (DENV-3) from cerebrospinal fluid of an encephalitis paediatric patient in Jakarta, Indonesia. Next-generation sequencing was employed to deduce the complete genome of the neurotropic DENV-3 isolate. Based on complete genome analysis, two unique and nine uncommon amino acid changes in the protein coding region were observed in the virus. A phylogenetic tree and molecular clock analysis revealed that the neurotropic virus was a member of Sumatran-Javan clade of DENV-3 genotype I and shared a common ancestor with other isolates from Jakarta around 1998. This is the first report of neurotropic DENV-3 complete genome analysis, providing detailed information on the genetic characteristics of this virus.

Indexed as

Genome, ViralSequence Analysis, DNASerogroupAmino Acid SubstitutionCerebrospinal FluidComputational BiologyDengueDengue VirusEncephalitis, ViralEvolution, MolecularHigh-Throughput Nucleotide SequencingHumansIndonesiaMutation, MissensePhylogeny

Identifiers

PMID29329287
PMCPMC5809095

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.