Evidence map›Paper›PMID 29329079›Full record

ArticleVirology2018

The interactome of EBV LMP1 evaluated by proximity-based BioID approach.

Mark A Rider, Mujeeb R Cheerathodi, Stephanie N Hurwitz, Dingani Nkosi, Lauren A Howell, Deanna C Tremblay, Xia Liu, Fanxiu Zhu, David G Meckes

Open access · greenAbstract read
In one paragraph

Article in Virology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
2.5field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 61 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. FishJournal of virology · 2024
    Article
  7. Targeting the LMP1-ALIX axis in EBVCancer communications (London, England) · 2024
    Article
  8. Article
  9. Review
  10. Article
  11. Review
  12. Extracellular Vesicle MicroRNA in the Kidney.Comprehensive Physiology · 2023
    Article
  13. Article
  14. Article
  15. Article
  16. Oncogenic Viruses as Entropic Drivers of Cancer Evolution.Frontiers in virology (Lausanne, Switzerland) · 2021
    Article
  17. Article
  18. A BioID-derived proximity interactome for SARS-CoV-2 proteins.bioRxiv : the preprint server for biology · 2021
    Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Mark A RiderDepartment of Biomedical Sciences, Florida State University College of Medicine, Tallahassee, FL 32306, United States.
Mujeeb R CheerathodiDepartment of Biomedical Sciences, Florida State University College of Medicine, Tallahassee, FL 32306, United States.
Stephanie N HurwitzDepartment of Biomedical Sciences, Florida State University College of Medicine, Tallahassee, FL 32306, United States.
Dingani NkosiDepartment of Biomedical Sciences, Florida State University College of Medicine, Tallahassee, FL 32306, United States.
Lauren A HowellDepartment of Biomedical Sciences, Florida State University College of Medicine, Tallahassee, FL 32306, United States.
Deanna C TremblayDepartment of Biomedical Sciences, Florida State University College of Medicine, Tallahassee, FL 32306, United States.
Xia LiuDepartment of Biomedical Sciences, Florida State University College of Medicine, Tallahassee, FL 32306, United States.
Fanxiu ZhuDepartment of Biological Sciences, Florida State University, Tallahassee, FL 32306, United States.
David G MeckesDepartment of Biomedical Sciences, Florida State University College of Medicine, Tallahassee, FL 32306, United States. Electronic address: david.meckes@med.fsu.edu.
Florida State University · US

Funding

Role of KSHV ORF45 in Viral Immune Evasion &ReplicationR01DE016680 · NIDCR · UNIVERSITY OF PENNSYLVANIA · PI ZHU, FANXIU · 2005 to 2015
$2.5M
Modulation of Host Cell Exosome Content and Function by EBV LMP1R01CA204621 · NCI · FLORIDA STATE UNIVERSITY · PI MECKES, DAVID G · 2016 to 2020
$2.2M
Subversion of cGAS DNA sensing by KSHV: Roles of ORF52/KicGASR01DE026101 · NIDCR · FLORIDA STATE UNIVERSITY · PI ZHU, FANXIU · 2016 to 2020
$1.8M
Exosome-Dependent Trafficking of Epstein-Barr Virus LMP1R15CA188941 · NCI · FLORIDA STATE UNIVERSITY · PI MECKES, DAVID G · 2015 to 2015
$414k
NCI NIH HHS R01 CA204621NCI NIH HHS R15 CA188941NIDCR NIH HHS R01 DE016680NIDCR NIH HHS R01 DE026101
6 · The paper itself

Abstract

Epstein-Barr virus LMP1 is an oncoprotein required for immortalizing B lymphocytes and also plays important roles in transforming non-lymphoid tissue. The discovery of LMP1 protein interactions will likely generate targets to treat EBV-associated cancers. Here, we define the broader LMP1 interactome using the recently developed BioID method. Combined with mass spectrometry, we identified over 1000 proteins across seven independent experiments with direct or indirect relationships to LMP1. Pathway analysis suggests that a significant number of the proteins identified are involved in signal transduction and protein or vesicle trafficking. Interestingly, a large number of proteins thought to be important in the formation of exosomes and protein targeting were recognized as probable LMP1 interacting partners, including CD63, syntenin-1, ALIX, TSG101, HRS, CHMPs, and sorting nexins. Therefore, it is likely that LMP1 modifies protein trafficking and exosome biogenesis pathways. In support of this, knock-down of syntenin-1 and ALIX resulted in reduced exosomal LMP1.

Indexed as

BiotinCalcium-Binding ProteinsCell Cycle ProteinsEndosomal Sorting Complexes Required for TransportEpstein-Barr Virus InfectionsExosomesHerpesvirus 4, HumanHost-Pathogen InteractionsHumansMass SpectrometryProtein BindingProtein Interaction MappingSignal TransductionSynteninsTetraspanin 30Viral Matrix ProteinsBiotinCalcium-Binding ProteinsCell Cycle ProteinsEBV-associated membrane antigen, Epstein-Barr virusEndosomal Sorting Complexes Required for TransportPDCD6IP protein, humanSynteninsTetraspanin 30Viral Matrix ProteinsEpstein-Barr virusExosomesExtracellular vesiclesHerpesvirusInteractionsLatent membrane protein 1Mass spectrometryProteomicsSignaling

Identifiers

PMID29329079
PMCPMC5826876
OpenAlexW2784128526

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.