Evidence map›Paper›PMID 29328063›Full record

ArticleThe ISME journal2018

Immune loss as a driver of coexistence during host-phage coevolution.

J L Weissman, Rayshawn Holmes, Rodolphe Barrangou, Sylvain Moineau, William F Fagan, Bruce Levin, Philip L F Johnson

Abstract read
In one paragraph

Article in The ISME journal, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed.

  1. Review
  2. Prophage diversity in poultry-associatedFrontiers in microbiology · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Long-Term Interactions ofFrontiers in cellular and infection microbiology · 2022
    Article
  15. Review
  16. Article
  17. Article
  18. Spontaneous Phage Resistance in Avian PathogenicFrontiers in microbiology · 2021
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

J L WeissmanDepartment of Biology, University of Maryland College Park, College Park, MD, USA.
Rayshawn HolmesDepartment of Biology, Emory University, Atlanta, GA, USA.
Rodolphe BarrangouDepartment of Food, Bioprocessing, & Nutrition Sciences, North Carolina State University, Raleigh, NC, USA.
Sylvain MoineauDepartment of Biochemistry, Microbiology and Bioinformatics, Université Laval, Québec, Québec, Canada.
William F FaganDepartment of Biology, University of Maryland College Park, College Park, MD, USA.
Bruce LevinDepartment of Biology, Emory University, Atlanta, GA, USA.
Philip L F JohnsonDepartment of Biology, University of Maryland College Park, College Park, MD, USA.

Funding

Population genetic inference from the adaptive immune systemR00GM104158 · NIGMS · UNIV OF MARYLAND, COLLEGE PARK · PI JOHNSON, PHILIP LEE FALK · 2015 to 2017
$747k
NIGMS NIH HHS R00 GM104158
6 · The paper itself

Abstract

Bacteria and their viral pathogens face constant pressure for augmented immune and infective capabilities, respectively. Under this reciprocally imposed selective regime, we expect to see a runaway evolutionary arms race, ultimately leading to the extinction of one species. Despite this prediction, in many systems host and pathogen coexist with minimal coevolution even when well-mixed. Previous work explained this puzzling phenomenon by invoking fitness tradeoffs, which can diminish an arms race dynamic. Here we propose that the regular loss of immunity by the bacterial host can also produce host-phage coexistence. We pair a general model of immunity with an experimental and theoretical case study of the CRISPR-Cas immune system to contrast the behavior of tradeoff and loss mechanisms in well-mixed systems. We find that, while both mechanisms can produce stable coexistence, only immune loss does so robustly within realistic parameter ranges.

Indexed as

Biological EvolutionCRISPR-Cas SystemsBacteriaBacteriophagesModels, Immunological

Identifiers

PMID29328063
PMCPMC5776473

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.