Evidence map›Paper›PMID 29325078›Full record

ArticleNucleic acids research2018

Genomic basis of recombination suppression in the hybrid between Caenorhabditis briggsae and C. nigoni.

Xiaoliang Ren, Runsheng Li, Xiaolin Wei, Yu Bi, Vincy Wing Sze Ho, Qiutao Ding, Zhichao Xu, Zhihong Zhang, Chia-Ling Hsieh, Amanda Young and 3 more

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
1.3field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 49 citations in OpenAlex.

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  9. A newborn F-box gene blocks gene flow by selectively degrading phosphoglucomutase in species hybrids.Proceedings of the National Academy of Sciences of the United States of America · 2024
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  13. Novel and improvedbioRxiv : the preprint server for biology · 2023
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  18. Ecology and evolution · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 3 countries.

Xiaoliang RenDepartment of Biology, Hong Kong Baptist University, Hong Kong, China.
Runsheng LiDepartment of Biology, Hong Kong Baptist University, Hong Kong, China.
Xiaolin WeiMOE Key Laboratory of Bioinformatics, Center for Synthetic and Systems Biology, School of Life Sciences, Tsinghua University, Beijing 100084, China.
Yu BiDepartment of Biology, Hong Kong Baptist University, Hong Kong, China.
Vincy Wing Sze HoDepartment of Biology, Hong Kong Baptist University, Hong Kong, China.
Qiutao DingDepartment of Biology, Hong Kong Baptist University, Hong Kong, China.
Zhichao XuMOE Key Laboratory of Bioinformatics, Center for Synthetic and Systems Biology, School of Life Sciences, Tsinghua University, Beijing 100084, China.
Zhihong ZhangIllumina Inc., 5200 Illumina Way, San Diego 92122, USA.
Chia-Ling HsiehIllumina Inc., 5200 Illumina Way, San Diego 92122, USA.
Amanda YoungIllumina Inc., 5200 Illumina Way, San Diego 92122, USA.
Jianyang ZengInstitute for Interdisciplinary Information Sciences, Tsinghua University, Beijing 100084, China.
Xiao LiuMOE Key Laboratory of Bioinformatics, Center for Synthetic and Systems Biology, School of Life Sciences, Tsinghua University, Beijing 100084, China.
Zhongying ZhaoDepartment of Biology, Hong Kong Baptist University, Hong Kong, China.
Hong Kong Baptist University · HKIllumina (United States) · USTsinghua University · CNPeking University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

DNA recombination is required for effective segregation and diversification of genomes and for the successful completion of meiosis. Recent studies in various species hybrids have demonstrated a genetic link between DNA recombination and speciation. Consistent with this, we observed a striking suppression of recombination in the hybrids between two nematodes, the hermaphroditic Caenorhabditis briggsae and the gonochoristic C. nigoni. To unravel the molecular basis underlying the recombination suppression in their hybrids, we generated a C. nigoni genome with chromosome-level contiguity and produced an improved C. briggsae genome with resolved gaps up to 2.8 Mb. The genome alignment reveals not only high sequence divergences but also pervasive intra- and inter-chromosomal sequence re-arrangements between the two species, which are plausible culprits for the observed suppression. Comparison of recombination boundary sequences suggests that recombination in the hybrid requires extensive sequence homology, which is rarely seen between the two genomes. The new genomes and genomic libraries form invaluable resources for studying genome evolution, hybrid incompatibilities and sex evolution for this pair of model species.

Indexed as

GenomeRecombination, GeneticAnimalsBase SequenceBiological EvolutionCaenorhabditisChimeraChromosome MappingCrosses, GeneticFemaleGenomic LibraryHermaphroditic OrganismsMaleMeiosisSequence Alignment

Identifiers

PMID29325078
PMCPMC5814819
OpenAlexW2782979543

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.