Evidence map›Paper›PMID 29323929›Full record

Observational studyAnnals of the American Thoracic Society2018

Variation in Cilia Protein Genes and Progression of Lung Disease in Cystic Fibrosis.

Elizabeth Blue, Tin L Louie, Jessica X Chong, Scott J Hebbring, Kathleen C Barnes, Nicholas M Rafaels, Michael R Knowles, Ronald L Gibson, Michael J Bamshad, Mary J Emond and 1 more

Abstract readObservational Study
In one paragraph

Observational study in Annals of the American Thoracic Society, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed, 2 pooled it
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 2 syntheses or guidelines pooled it, 20 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Trial
  4. Article
  5. Ciliary Function, Antigen Stasis and Asthma.International journal of molecular sciences · 2024
    Review
  6. A novel frameshift mutation inFrontiers in endocrinology · 2023
    Article
  7. Article
  8. Review
  9. Update in Cystic Fibrosis 2018.American journal of respiratory and critical care medicine · 2019
    Review
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 7 institutions in 2 countries.

Elizabeth Blue1 Division of Medical Genetics.
Tin L Louie2 Department of Biostatistics.
Jessica X Chong3 Department of Pediatrics, and.
Scott J Hebbring4 Center for Human Genetics, Marshfield Clinic, Marshfield, Wisconsin.
Kathleen C Barnes5 Division of Biomedical Informatics and Personalized Medicine, University of Colorado, Aurora, Colorado.
Nicholas M Rafaels5 Division of Biomedical Informatics and Personalized Medicine, University of Colorado, Aurora, Colorado.
Michael R Knowles6 Cystic Fibrosis/Pulmonary Research and Treatment Center, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina; and.
Ronald L Gibson3 Department of Pediatrics, and.
Michael J Bamshad3 Department of Pediatrics, and.
Mary J Emond2 Department of Biostatistics.
U.S. National Heart, Lung, and Blood Institute “Grand Opportunity” Exome Sequencing Project (LungGO)
University of Colorado Anschutz Medical Campus · USCenter for Human Genetics · USMedical Genetics Center · DEPediatrics and Genetics · USPulmonary Associates · USSeattle Children's Hospital · USUniversity of North Carolina at Chapel Hill · US

Funding

University of Wisconsin Institute for Clinical and Translational ResearchUL1TR002373 · NCATS · UNIVERSITY OF WISCONSIN-MADISON · PI ELIZABETH S BURNSIDE, Allan R. Brasier · 2017 to 2026
$75.9M
Institutional Clinical and Translational Science AwardUL1TR000427 · NCATS · UNIVERSITY OF WISCONSIN-MADISON · PI DREZNER, MARC KENNETH · 2012 to 2016
$32.2M
Translational Research Center to Expedite Novel Therapies in Cystic FibrosisP30DK089507 · NIDDK · SEATTLE CHILDREN'S HOSPITAL · PI Stephen J Salipante · 2010 to 2026
$21.4M
Northwest Genomics CenterRC2HL102926 · NHLBI · UNIVERSITY OF WASHINGTON · PI GREEN, PHILIP P, NICKERSON, DEBORAH A · 2009 to 2009
$11.0M
Comprehensive Sequencing and Analysis of Variation in NHLBI CohortsRC2HL102925 · NHLBI · BROAD INSTITUTE, INC. · PI ALTSHULER, DAVID, GABRIEL, STACEY · 2009 to 2009
$10.2M
ARRA - NHLBI Lung Cohorts Sequencing ProjectRC2HL102923 · NHLBI · UNIVERSITY OF WASHINGTON · PI BAMSHAD, MICHAEL JOSEPH, BARNES, KATHLEEN C · 2009 to 2009
$2.6M
WHI Sequencing Project (WHISP)RC2HL102924 · NHLBI · OHIO STATE UNIVERSITY · PI CARLSON, CHRISTOPHER S, JACKSON, REBECCA D · 2009 to 2009
$2.1M
PheWAS of Loss-of-Function VariantsR01GM114128 · NIGMS · MARSHFIELD CLINIC RESEARCH FOUNDATION · PI HEBBRING, SCOTT JOSEPH · 2015 to 2019
$1.7M
Human Exome Sequencing in Six Well-Phenotyped NHLBI CohortsRC2HL103010 · NHLBI · UNIVERSITY OF VIRGINIA · PI RICH, STEPHEN S. · 2009 to 2009
$817k
Development and Application of Phenome-wide Scan of Heritability (PheSH)K22LM011938 · NLM · MARSHFIELD CLINIC RESEARCH FOUNDATION · PI HEBBRING, SCOTT JOSEPH · 2014 to 2016
$405k
NCATS NIH HHS UL1 TR000427NCATS NIH HHS UL1 TR002373NHLBI NIH HHS RC2 HL102923NHLBI NIH HHS RC2 HL102924NHLBI NIH HHS RC2 HL102925NHLBI NIH HHS RC2 HL102926NHLBI NIH HHS RC2 HL103010NIDDK NIH HHS P30 DK089507NIGMS NIH HHS R01 GM114128NLM NIH HHS K22 LM011938
6 · The paper itself

Abstract

rationaleCystic fibrosis, like primary ciliary dyskinesia, is an autosomal recessive disorder characterized by abnormal mucociliary clearance and obstructive lung disease. We hypothesized that genes underlying the development or function of cilia may modify lung disease severity in persons with cystic fibrosis.

objectivesTo test this hypothesis, we compared variants in 93 candidate genes in both upper and lower tertiles of lung function in a large cohort of children and adults with cystic fibrosis with those of a population control dataset.

methodsVariants within candidate genes were tested for association using the SKAT-O test, comparing cystic fibrosis cases defined by poor (n = 127) or preserved (n = 127) lung function with population controls (n = 3,269 or 3,148, respectively). Associated variants were then tested for association with related phenotypes in independent datasets.

resultsVariants in DNAH14 and DNAAF3 were associated with poor lung function in cystic fibrosis, whereas variants in DNAH14 and DNAH6 were associated with preserved lung function in cystic fibrosis. Associations between DNAH14 and lung function were replicated in disease-related phenotypes characterized by obstructive lung disease in adults.

conclusionsGenetic variants within DNAH6, DNAH14, and DNAAF3 are associated with variation in lung function among persons with cystic fibrosis.

Indexed as

AdolescentAdultAgedCase-Control StudiesCiliaCohort StudiesCystic FibrosisDisease ProgressionDyneinsFemaleGenetic Association StudiesGenetic VariationHumansMaleMicrotubule-Associated ProteinsMiddle AgedDNAAF3 protein, humanDNAH14 protein, humanDNAH6 protein, humanDyneinsMicrotubule-Associated Proteinsciliary motility disorderscystic fibrosisgenetic association studiesrespiratory function tests

Identifiers

PMID29323929
PMCPMC5879139
OpenAlexW2784297116

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.