Evidence map›Paper›PMID 29323921›Full record

ArticleThe journal of physical chemistry. B2018

Membrane Anchoring of α-Helical Proteins: Role of Tryptophan.

Alan J Situ, So-Min Kang, Benjamin B Frey, Woojin An, Chungho Kim, Tobias S Ulmer

Open access · greenAbstract read
In one paragraph

Article in The journal of physical chemistry. B, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 36 citations in OpenAlex.

  1. Review
  2. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Alan J SituDepartment of Biochemistry & Molecular Medicine and Zilkha Neurogenetic Institute, Keck School of Medicine, University of Southern California , 1501 San Pablo Street, Los Angeles, California 90033, United States.
So-Min KangDepartment of Life Sciences, Korea University , 145 Anam-Ro, Seongbuk-Gu, Seoul 136-701, South Korea.
Benjamin B FreyDepartment of Biochemistry & Molecular Medicine and Zilkha Neurogenetic Institute, Keck School of Medicine, University of Southern California , 1501 San Pablo Street, Los Angeles, California 90033, United States.
Woojin AnDepartment of Biochemistry & Molecular Medicine and Norris Comprehensive Cancer Center, University of Southern California , Los Angeles, California 90033, United States.
Chungho KimDepartment of Life Sciences, Korea University , 145 Anam-Ro, Seongbuk-Gu, Seoul 136-701, South Korea.
Tobias S UlmerDepartment of Biochemistry & Molecular Medicine and Zilkha Neurogenetic Institute, Keck School of Medicine, University of Southern California , 1501 San Pablo Street, Los Angeles, California 90033, United States.ORCID 0000-0001-7811-2131
University of Southern California · USKorea University · KR

Funding

Mechanisms of Integrin Receptor Transmembrane SignalingR01HL089726 · NHLBI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI ULMER, TOBIAS SEBASTIAN · 2008 to 2012
$1.8M
NHLBI NIH HHS R01 HL089726
6 · The paper itself

Abstract

The function of membrane proteins relies on a defined orientation of protein relative to lipid. In apparent correlation to protein anchoring, tryptophan residues are enriched in the lipid headgroup region. To characterize the thermodynamic and structural basis of this relationship in α-helical membrane proteins, we examined the role of three conserved tryptophans in the folding of the heterodimeric integrin αIIbβ3 transmembrane (TM) complex in phospholipid bicelles and mammalian membranes. In the homogenous lipid environment of bicelles, tryptophan was replaceable by residues of distinct polarities. The appropriate polarity was guided by the electrostatic potential of the tryptophan surrounding, suggesting that tryptophan can complement diverse environments by adjusting the orientation of its anisotropic side chain to achieve site-specific anchoring. As a sole membrane anchor, tryptophan made a contribution of 0.4 kcal/mol to TM complex stability in bicelles. In membranes, it proved more difficult to replace tryptophan even by tyrosine, indicating a superior capacity to interact with heterogeneous lipids of biological membranes. Interestingly, at intracellular TM helix ends, where integrin activation is initiated, sequence motifs that interact with lipids via opposing polarity patterns were found to restrict TM helix orientations beyond tryptophan anchoring. In contrast to bicelles, phenylalanine became the least accepted substitute in membranes, demonstrating an increased role of the hydrophobic effect. Altogether, our study implicates a wide amphiphilic range of tryptophan, membrane complexity, and the hydrophobic effect to be important factors in tryptophan membrane anchoring.

Indexed as

HumansPlatelet Glycoprotein GPIIb-IIIa ComplexProtein Structure, SecondaryThermodynamicsTryptophanPlatelet Glycoprotein GPIIb-IIIa ComplexTryptophan

Identifiers

PMID29323921
PMCPMC11025564
OpenAlexW2783213712

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.