Evidence map›Paper›PMID 29323272›Full record

ArticleNature structural & molecular biology2018

Dominant-negative SMARCA4 mutants alter the accessibility landscape of tissue-unrestricted enhancers.

H Courtney Hodges, Benjamin Z Stanton, Katerina Cermakova, Chiung-Ying Chang, Erik L Miller, Jacob G Kirkland, Wai Lim Ku, Vaclav Veverka, Keji Zhao, Gerald R Crabtree

Open access · greenAbstract read
In one paragraph

Article in Nature structural & molecular biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 131 papers.

0numbers the graph read from it
0cells of the map it votes in
131citing papers in PubMed
6.9field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

131 citing papers in PubMed, 192 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Polycomb-mediated 3D chromatin interactions in gene regulation.Current opinion in genetics & development · 2026
    Review
  10. Article
  11. Article
  12. Review
  13. Article
  14. Review
  15. Prognostic Impact ofBiomedicines · 2025
    Article
  16. Article
  17. Article
  18. Article
  19. The role of SMARCA4 in lung cancer.Scientific reports · 2025
    Review
  20. Article

71 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 2 countries.

H Courtney HodgesDepartment of Molecular & Cellular Biology, Center for Precision Environmental Health, and Dan L Duncan Comprehensive Cancer Center, Baylor College of Medicine, Houston, TX, USA.ORCID 0000-0003-4441-497X
Benjamin Z StantonDepartments of Pathology, Genetics, and Developmental Biology, Stanford University School of Medicine, Stanford, CA, USA.ORCID 0000-0002-2613-2955
Katerina CermakovaDepartment of Molecular & Cellular Biology, Center for Precision Environmental Health, and Dan L Duncan Comprehensive Cancer Center, Baylor College of Medicine, Houston, TX, USA.ORCID 0000-0003-3006-2213
Chiung-Ying ChangDepartments of Pathology, Genetics, and Developmental Biology, Stanford University School of Medicine, Stanford, CA, USA.
Erik L MillerDepartments of Pathology, Genetics, and Developmental Biology, Stanford University School of Medicine, Stanford, CA, USA.
Jacob G KirklandDepartments of Pathology, Genetics, and Developmental Biology, Stanford University School of Medicine, Stanford, CA, USA.ORCID 0000-0001-5617-7065
Wai Lim KuSystems Biology Center, Laboratory of Epigenome Biology, National Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, MD, USA.ORCID 0000-0002-8859-6771
Vaclav VeverkaInstitute of Organic Chemistry and Biochemistry, Czech Academy of Sciences, Prague, Czech Republic.ORCID 0000-0003-3782-5279
Keji ZhaoSystems Biology Center, Laboratory of Epigenome Biology, National Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, MD, USA. zhaok@nhlbi.nih.gov.
Gerald R CrabtreeDepartments of Pathology, Genetics, and Developmental Biology, Stanford University School of Medicine, Stanford, CA, USA. crabtree@stanford.edu.ORCID 0000-0001-9685-7911
National Institutes of Health · USStanford University · USBaylor College of Medicine · USCzech Academy of Sciences, Institute of Organic Chemistry and Biochemistry · CZHoward Hughes Medical Institute · US

Funding

Genome-wide mapping of histone modificationsZIAHL005801 · NHLBI · NATIONAL HEART, LUNG, AND BLOOD INSTITUTE · PI ZHAO, KEJI · 2009 to 2025
$24.0M
Epigenetic Regulation of Hematopoietic Stem CellsZIAHL006031 · NHLBI · NATIONAL HEART, LUNG, AND BLOOD INSTITUTE · PI ZHAO, KEJI · 2009 to 2025
$16.6M
Epigenetic Regulation of T cell differentiationZIAHL006030 · NHLBI · NATIONAL HEART, LUNG, AND BLOOD INSTITUTE · PI ZHAO, KEJI · 2009 to 2025
$15.3M
TUMOR BIOLOGYT32CA009151 · NCI · STANFORD UNIVERSITY · PI CLEARY, MICHAEL L · 1985 to 2014
$5.5M
ATP-Dependent Chromatin Remodeling in Human MalignancyR01CA163915 · NCI · STANFORD UNIVERSITY · PI Gerald R. Crabtree · 2012 to 2026
$5.4M
ATP-Dependent Chromatin Regulation in Neurodevelopment and Human DiseaseR37NS046789 · NINDS · STANFORD UNIVERSITY · PI CRABTREE, GERALD R. · 2013 to 2019
$2.7M
Dynamic effects of cancer mutations on the mammalian SWI/SNF ATPase BrgR00CA187565 · NCI · BAYLOR COLLEGE OF MEDICINE · PI HODGES, HAMILTON COURTNEY · 2017 to 2019
$747k
Howard Hughes Medical InstituteNCI NIH HHS R00 CA187565NCI NIH HHS R01 CA163915NCI NIH HHS T32 CA009151NINDS NIH HHS R37 NS046789
6 · The paper itself

Abstract

Mutation of SMARCA4 (BRG1), the ATPase of BAF (mSWI/SNF) and PBAF complexes, contributes to a range of malignancies and neurologic disorders. Unfortunately, the effects of SMARCA4 missense mutations have remained uncertain. Here we show that SMARCA4 cancer missense mutations target conserved ATPase surfaces and disrupt the mechanochemical cycle of remodeling. We find that heterozygous expression of mutants alters the open chromatin landscape at thousands of sites across the genome. Loss of DNA accessibility does not directly overlap with Polycomb accumulation, but is enriched in 'A compartments' at active enhancers, which lose H3K27ac but not H3K4me1. Affected positions include hundreds of sites identified as superenhancers in many tissues. Dominant-negative mutation induces pro-oncogenic expression changes, including increased expression of Myc and its target genes. Together, our data suggest that disruption of enhancer accessibility represents a key source of altered function in disorders with SMARCA4 mutations in a wide variety of tissues.

Indexed as

Genes, DominantMutationAdenosine TriphosphatasesAnimalsChromatinChromatin Assembly and DisassemblyCulture MediaDNA HelicasesEnhancer Elements, GeneticEpigenomicsGenotypeHeterozygoteHumansMiceMice, TransgenicMouse Embryonic Stem CellsAdenosine TriphosphatasesChromatinCulture MediaDNA HelicasesNuclear ProteinsPolycomb-Group ProteinsSMARCA4 protein, humanTranscription Factors

Identifiers

PMID29323272
PMCPMC5909405
OpenAlexW2773488974

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.