Evidence map›Paper›PMID 29323249›Full record

ArticleScientific reports2018

Probabilistic data integration identifies reliable gametocyte-specific proteins and transcripts in malaria parasites.

Lisette Meerstein-Kessel, Robin van der Lee, Will Stone, Kjerstin Lanke, David A Baker, Pietro Alano, Francesco Silvestrini, Chris J Janse, Shahid M Khan, Marga van de Vegte-Bolmer and 10 more

Abstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed.

  1. Article
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  3. Serological evidence of high exposure toMalariaWorld journal · 2026
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  6. eLife · 2024
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  7. bioRxiv : the preprint server for biology · 2024
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  13. Identification of Novel Malaria Transmission-Blocking Vaccine Candidates.Frontiers in cellular and infection microbiology · 2021
    Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Frontiers in immunology · 2020
    Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors.

Lisette Meerstein-KesselCentre for Molecular and Biomolecular Informatics, Radboud Institute for Molecular Life Sciences, Radboud university medical center, Nijmegen, The Netherlands.
Robin van der LeeCentre for Molecular and Biomolecular Informatics, Radboud Institute for Molecular Life Sciences, Radboud university medical center, Nijmegen, The Netherlands.ORCID http://orcid.org/0000-0001-7391-9438
Will StoneDepartment of Medical Microbiology, Radboud university medical center, Nijmegen, The Netherlands.
Kjerstin LankeDepartment of Medical Microbiology, Radboud university medical center, Nijmegen, The Netherlands.
David A BakerDepartment of Pathogen Molecular Biology, Faculty of Infectious and Tropical Diseases, London School of Hygiene & Tropical Medicine, London, United Kingdom.ORCID http://orcid.org/0000-0002-5490-8933
Pietro AlanoDipartimento Malattie Infettive, Istituto Superiore di Sanità, Rome, Italy.
Francesco SilvestriniDipartimento Malattie Infettive, Istituto Superiore di Sanità, Rome, Italy.
Chris J JanseDepartment of Parasitology, Leiden University Medical Center, Leiden, The Netherlands.
Shahid M KhanDepartment of Parasitology, Leiden University Medical Center, Leiden, The Netherlands.
Marga van de Vegte-BolmerDepartment of Medical Microbiology, Radboud university medical center, Nijmegen, The Netherlands.
Wouter GraumansDepartment of Medical Microbiology, Radboud university medical center, Nijmegen, The Netherlands.
Rianne Siebelink-StoterDepartment of Medical Microbiology, Radboud university medical center, Nijmegen, The Netherlands.
Taco W A KooijDepartment of Medical Microbiology, Radboud university medical center, Nijmegen, The Netherlands.ORCID http://orcid.org/0000-0002-8547-7523
Matthias MartiWellcome Trust Center for Molecular Parasitology, Institute of Infection, Immunity and Inflammation, College of Medical Veterinary & Life Sciences, University of Glasgow, Glasgow, Scotland, United Kingdom.
Chris DrakeleyDepartment of Immunology and Infection, Faculty of Infectious and Tropical Diseases, London School of Hygiene & Tropical Medicine, London, United Kingdom.
Joseph J CampoAntigen Discovery Inc., Irvine, California, USA.
Teunis J P van DamCentre for Molecular and Biomolecular Informatics, Radboud Institute for Molecular Life Sciences, Radboud university medical center, Nijmegen, The Netherlands.ORCID http://orcid.org/0000-0002-8122-190X
Robert SauerweinDepartment of Medical Microbiology, Radboud university medical center, Nijmegen, The Netherlands.
Teun BousemaDepartment of Medical Microbiology, Radboud university medical center, Nijmegen, The Netherlands.
Martijn A HuynenCentre for Molecular and Biomolecular Informatics, Radboud Institute for Molecular Life Sciences, Radboud university medical center, Nijmegen, The Netherlands. Martijn.Huijnen@radboudumc.nl.

Funding

Wellcome Trust
6 · The paper itself

Abstract

Plasmodium gametocytes are the sexual forms of the malaria parasite essential for transmission to mosquitoes. To better understand how gametocytes differ from asexual blood-stage parasites, we performed a systematic analysis of available 'omics data for P. falciparum and other Plasmodium species. 18 transcriptomic and proteomic data sets were evaluated for the presence of curated "gold standards" of 41 gametocyte-specific versus 46 non-gametocyte genes and integrated using Bayesian probabilities, resulting in gametocyte-specificity scores for all P. falciparum genes. To illustrate the utility of the gametocyte score, we explored newly predicted gametocyte-specific genes as potential biomarkers of gametocyte carriage and exposure. We analyzed the humoral immune response in field samples against 30 novel gametocyte-specific antigens and found five antigens to be differentially recognized by gametocyte carriers as compared to malaria-infected individuals without detectable gametocytes. We also validated the gametocyte-specificity of 15 identified gametocyte transcripts on culture material and samples from naturally infected individuals, resulting in eight transcripts that were >1000-fold higher expressed in gametocytes compared to asexual parasites and whose transcript abundance allowed gametocyte detection in naturally infected individuals. Our integrated genome-wide gametocyte-specificity scores provide a comprehensive resource to identify targets and monitor P. falciparum gametocytemia.

Indexed as

AnimalsAntigens, ProtozoanBayes TheoremDatabases, GeneticGene Expression ProfilingGene Expression Regulation, DevelopmentalHumansImmunity, HumoralMalariaPlasmodiumProtein Array AnalysisProteomicsProtozoan ProteinsAntigens, ProtozoanProtozoan Proteins

Identifiers

PMID29323249
PMCPMC5765010

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.