Evidence map›Paper›PMID 29321502›Full record

ArticleNature communications2018

The peroxisomal AAA-ATPase Pex1/Pex6 unfolds substrates by processive threading.

Brooke M Gardner, Dominic T Castanzo, Saikat Chowdhury, Goran Stjepanovic, Matthew S Stefely, James H Hurley, Gabriel C Lander, Andreas Martin

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 62 citations in OpenAlex.

  1. Building peroxisomes: perspectives on plant peroxins.Biochemical Society transactions · 2026
    Review
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. PEX1The Journal of biological chemistry · 2025
    Article
  9. Article
  10. Potential biomarkers in hypoglycemic brain injury.Forensic science, medicine, and pathology · 2024
    Article
  11. Review
  12. Article
  13. The peroxisome: an update on mysteries 3.0.Histochemistry and cell biology · 2024
    Review
  14. Article
  15. Article
  16. EngineeringSynthetic and systems biotechnology · 2023
    Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Brooke M GardnerDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA, 94720, USA.
Dominic T CastanzoDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA, 94720, USA.
Saikat ChowdhuryDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA, 92037, USA.ORCID http://orcid.org/0000-0001-8043-5028
Goran StjepanovicDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA, 94720, USA.ORCID http://orcid.org/0000-0002-4841-9949
Matthew S StefelyDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA, 94720, USA.
James H HurleyDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA, 94720, USA.
Gabriel C LanderDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA, 92037, USA.ORCID http://orcid.org/0000-0003-4921-1135
Andreas MartinDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA, 94720, USA. a.martin@berkeley.edu.
University of California, Berkeley · USQB3 · USScripps Research Institute · USLawrence Berkeley National Laboratory · US

Funding

THE MOLECULAR BASIS OF CELL FUNCTIONT32GM007232 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI BILDER, DAVID, UNAL, ELCIN · 1985 to 2022
$36.4M
ATP-Dependent Protein Unfolding and Translocation by the Eukaryotic ProteasomeR01GM094497 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI MARTIN, ANDREAS · 2011 to 2024
$3.7M
Molecular basis of axonal transport described by high-resolution 3D imagingDP2EB020402 · NIBIB · SCRIPPS RESEARCH INSTITUTE, THE · PI LANDER, GABRIEL C · 2014 to 2014
$2.8M
Minstrel HTUV Gallery 700 Automated Crystal Growth and Imaging SystemS10OD016268 · OD · UNIVERSITY OF CALIFORNIA BERKELEY · PI DOUDNA, JENNIFER A · 2013 to 2013
$377k
Investigating the role of AAA+-ATPases in peroxisome biologyK99GM121880 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI GARDNER, BROOKE MEGHAN · 2017 to 2018
$173k
NIBIB NIH HHS DP2 EB020402NIGMS NIH HHS K99 GM121880NIGMS NIH HHS R01 GM094497NIGMS NIH HHS T32 GM007232NIH HHS S10 OD016268
6 · The paper itself

Abstract

Pex1 and Pex6 form a heterohexameric motor essential for peroxisome biogenesis and function, and mutations in these AAA-ATPases cause most peroxisome-biogenesis disorders in humans. The tail-anchored protein Pex15 recruits Pex1/Pex6 to the peroxisomal membrane, where it performs an unknown function required for matrix-protein import. Here we determine that Pex1/Pex6 from S. cerevisiae is a protein translocase that unfolds Pex15 in a pore-loop-dependent and ATP-hydrolysis-dependent manner. Our structural studies of Pex15 in isolation and in complex with Pex1/Pex6 illustrate that Pex15 binds the N-terminal domains of Pex6, before its C-terminal disordered region engages with the pore loops of the motor, which then processively threads Pex15 through the central pore. Furthermore, Pex15 directly binds the cargo receptor Pex5, linking Pex1/Pex6 to other components of the peroxisomal import machinery. Our results thus support a role of Pex1/Pex6 in mechanical unfolding of peroxins or their extraction from the peroxisomal membrane during matrix-protein import.

Indexed as

Adenosine TriphosphatasesATPases Associated with Diverse Cellular ActivitiesMembrane ProteinsPeroxisomesPhosphoproteinsProtein ConformationSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsAdenosine TriphosphatasesATPases Associated with Diverse Cellular ActivitiesMembrane ProteinsPEX15 protein, S cerevisiaePEX1 protein, S cerevisiaePEX6 protein, S cerevisiaePhosphoproteinsSaccharomyces cerevisiae Proteins

Identifiers

PMID29321502
PMCPMC5762779
OpenAlexW2782500865

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.