Evidence map›Paper›PMID 29321329›Full record

ArticleJournal of virology2018

A Cyclin-Binding Motif in Human SAMHD1 Is Required for Its HIV-1 Restriction, dNTPase Activity, Tetramer Formation, and Efficient Phosphorylation.

Corine St Gelais, Sun Hee Kim, Victoria V Maksimova, Olga Buzovetsky, Kirsten M Knecht, Caitlin Shepard, Baek Kim, Yong Xiong, Li Wu

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.6field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 22 citations in OpenAlex.

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  13. The structural basis for cancer drug interactions with the catalytic and allosteric sites of SAMHD1.Proceedings of the National Academy of Sciences of the United States of America · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Corine St GelaisCenter for Retrovirus Research, Department of Veterinary Biosciences, The Ohio State University, Columbus, Ohio, USA.
Sun Hee KimCenter for Retrovirus Research, Department of Veterinary Biosciences, The Ohio State University, Columbus, Ohio, USA.
Victoria V MaksimovaCenter for Retrovirus Research, Department of Veterinary Biosciences, The Ohio State University, Columbus, Ohio, USA.
Olga BuzovetskyDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticut, USA.
Kirsten M KnechtDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticut, USA.
Caitlin ShepardCenter for Drug Discovery, Department of Pediatrics, School of Medicine, Emory University, Atlanta, Georgia, USA.
Baek KimCenter for Drug Discovery, Department of Pediatrics, School of Medicine, Emory University, Atlanta, Georgia, USA.
Yong XiongDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticut, USA.
Li WuCenter for Retrovirus Research, Department of Veterinary Biosciences, The Ohio State University, Columbus, Ohio, USA wu.840@osu.edu.ORCID https://orcid.org/0000-0002-5468-2487
The Ohio State University · USYale University · USEmory University · US

Funding

Skill Development for Diverse Scientific Careers: A New Course Predoctoral Program in Cellular and Molecular BiologyT32GM007223 · NIGMS · YALE UNIVERSITY · PI BASERGA, SUSAN J · 1985 to 2019
$31.0M
PREDOCTORAL PROGRAM IN BIOPHYSICST32GM008283 · NIGMS · YALE UNIVERSITY · PI XIONG, YONG · 1988 to 2022
$10.5M
Replication fidelity and lentiviral pathogenesisR01AI049781 · NIAID · UNIVERSITY OF ROCHESTER · PI KIM, BAEK · 2002 to 2016
$4.9M
SAMHD1 controls dNTP pool and HIV sensitivity to NRTIsR01GM104198 · NIGMS · UNIVERSITY OF ROCHESTER · PI KIM, BAEK · 2012 to 2018
$2.3M
Mechanisms of SAMHD1-mediated HIV-1 restriction in dendritic cellsR01AI104483 · NIAID · OHIO STATE UNIVERSITY · PI WU, LI · 2013 to 2016
$1.5M
Mechanisms of HIV-1 RNA Methylation in Regulating Viral ReplicationR01GM128212 · NIGMS · OHIO STATE UNIVERSITY · PI WU, LI · 2017 to 2018
$831k
HIV-1 Nef Interaction with Nef-associated Factor 1 Regulates Viral LatencyR01AI120209 · NIAID · OHIO STATE UNIVERSITY · PI WU, LI · 2015 to 2017
$600k
Replicational Fidelity and Lentivial PathogenesisR56AI049781 · NIAID · EMORY UNIVERSITY · PI KIM, BAEK · 2017 to 2017
$390k
NIAID NIH HHS R01 AI049781NIAID NIH HHS R01 AI104483NIAID NIH HHS R01 AI120209NIAID NIH HHS R56 AI049781NIGMS NIH HHS R01 GM104198NIGMS NIH HHS R01 GM128212NIGMS NIH HHS T32 GM007223NIGMS NIH HHS T32 GM008283
6 · The paper itself

Abstract

Sterile alpha motif and HD domain-containing protein 1 (SAMHD1) regulates intracellular deoxynucleoside triphosphate (dNTP) levels and functions as a retroviral restriction factor through its dNTP triphosphohydrolase (dNTPase) activity. Human SAMHD1 interacts with cell cycle regulatory proteins cyclin A2, cyclin-dependent kinase 1 (CDK1), and CDK2. This interaction mediates phosphorylation of SAMHD1 at threonine 592 (T592), which negatively regulates HIV-1 restriction. We previously reported that the interaction is mediated, at least in part, through a cyclin-binding motif (RXL, amino acids [aa] 451 to 453). To understand the role of the RXL motif in regulating SAMHD1 activity, we performed structural and functional analyses of RXL mutants and the effect on HIV-1 restriction. We found that the RXL mutation (R451A and L453A, termed RL/AA) disrupted SAMHD1 tetramer formation and abolished its dNTPase activity

Indexed as

HIV-1HIV InfectionsMutation, MissenseProtein MultimerizationSAM Domain and HD Domain-Containing Protein 1Amino Acid MotifsAmino Acid SubstitutionHEK293 CellsHumansPhosphorylationProtein DomainsStructure-Activity RelationshipTHP-1 CellsU937 CellsSAM Domain and HD Domain-Containing Protein 1SAMHD1 protein, humancyclin bindingdNTPaseHIV-1infectionrestrictionSAMHD1structure

Identifiers

PMID29321329
PMCPMC5827405
OpenAlexW2782595765

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.